Kaistella jeonii: NCTC13459_02592
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Entry
NCTC13459_02592 CDS
T06863
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cjg
Kaistella jeonii
Pathway
cjg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13459_02592 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjg03021
]
NCTC13459_02592 (rpoB)
03400 DNA repair and recombination proteins [BR:
cjg03400
]
NCTC13459_02592 (rpoB)
Enzymes [BR:
cjg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13459_02592 (rpoB)
Transcription machinery [BR:
cjg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13459_02592 (rpoB)
DNA repair and recombination proteins [BR:
cjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13459_02592 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DTP-pb9_B-dom
Motif
Other DBs
NCBI-ProteinID:
VEI96939
LinkDB
All DBs
Position
1:2705977..2709804
Genome browser
AA seq
1275 aa
AA seq
DB search
MSKSKAVAKTQGTERINFSVAKGKIETPDFLDIQIQSFKGFFQLDTLPEQRLNESLYKTF
QENFPITDSRNNFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQ
TVVQDVYLGPIPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPF
KGSWMEFTTDINNVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALK
KVEGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETVLEKEHLDLILDAGVKSIL
IHKENSHEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRY
SLGEVGRYRLNKKLGLNIPAKTEVLTKEDIISIVRHLIELVNAKAEVDDIDHLSNRRIKT
VGEQLSGQFGVGLSRIARTIRERMNVRDNEIFTPIDLVNAKTLTSVINSFFGTNQLSQFM
DQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSL
GIYAKINTLGFIETPYRKVNNGKVDLKTAAIFLNAEDEEDKVIAQANVEMLDDGTISTDR
VIARLDGDYPVVEPQQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLL
KPEAPIVGTGLEKQVASDSRILINAEGNGTVEYVDAVKITIKYERSEDADLVSFDTATKS
YKLTKFRKTNQGTTITLRPNVRVGDKVVKGQVLCDGYATENGELALGRNLVVAFMPWKGY
NFEDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGM
IRIGADVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVIN
KKLFSRNIKDKKKRSEEKLKLEEIENTYKGKNDDLRNLLLEKLGTLVNGKTSQGVNNDLD
EEIIGKGVKFTTKLLQSVEDYVNVSGADWTVDAERNELIKQLIHNFKIKSNDLNGVKNRE
KFAISIGDELPAGIIKLAKVYVAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGT
PVDIVLNPLGVPSRMNIGQIYETVLGWAGKKLGLKFATPIFDGANIDQITEYTKQANLPE
FGSTYLYDGGTGERFSQPATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFG
GQRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVL
LHELQGLGLDVRLEE
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatctaaagcagtcgctaaaactcagggaaccgaaagaatcaacttttccgta
gctaaaggaaaaattgaaactcctgactttttggacattcagatccaatctttcaaaggt
tttttccagttggatacccttccggagcagagattaaacgaatctctttacaaaaccttt
caagaaaattttccaatcaccgattctcgaaacaatttcgttttagaatttttggattat
ttggtagattccccacgttactctatcgacgagtgtgtggaaagaggtttaacttattca
gttcctctgaaagctagacttaaattgtattgtactgaccctgaacatgaagattttcag
accgttgtacaagacgtatatttaggtccgattccttatatgacgccttcaggatcattt
attattaatggtgccgaacgtgttattgtaacccagttgcacagatctccgggggtgttt
tttggtcaaacttaccacgccaacggaacgaaattgtattattccagaattatccctttc
aaaggatcttggatggaatttacaaccgatatcaacaacgtaatgtacgcttacattgac
cgtaagaaaaaattaccgttgacaaccttattaagagcaatcggatatgaatccgataaa
gatatccttcagatttttgaccttgccgaagaagtgaaagtttctaaagcagcgttgaaa
aaagtggaagggcgtactttggctgcgagagttttgaacacttggtttgaagatttcgtt
gacgaagatactggtgaagtagtttctattgaaagaaatgaaatcatcttagatagagaa
actgttcttgaaaaagaacatttagaccttattcttgatgctggtgtgaaatctattttg
atccacaaagaaaacagccacgaattctctattattcagaatactttacaaaaagatcca
accaactctgaaaaagaagcggttgaatatatttatcgtcagttgcgtaatgcagatcca
cccgatgaagaaacagcaagaggaattatcgaaaaattattcttctctgagcaacgttat
tcactaggagaagttggtcgttacagattgaacaaaaaattaggattaaatattcctgcg
aaaactgaagttttaaccaaagaagatatcatctcgatcgtaagacatttgatcgaattg
gtaaacgctaaagcggaagttgatgatattgatcacttgtcaaacagacgtattaaaact
gttggtgagcaattatcaggacagtttggagtaggtctttccagaattgcaagaacaatc
cgtgagagaatgaacgttagagataacgaaatctttactccgattgacttggtaaacgca
aaaactttaacctctgtaattaattcattcttcggaacgaatcaattatctcagttcatg
gatcaaaccaatccattatcagaaatcacgcacaagcgtagactttctgctctaggacct
ggtggactttcaagagaaagagcaggttttgaggtacgtgacgttcaccatacgcactac
ggaagaatttgcccgatagaaactccagagggaccaaacattggtttgatttcttctcta
ggaatttatgcaaaaattaatactttaggttttatcgaaacgccttatagaaaagtaaac
aacggtaaagttgatcttaaaactgctgctattttcttgaatgctgaagatgaagaagat
aaagtaattgcacaggcaaacgttgagatgcttgatgatggtactatttctacagataga
gtaattgctcgtttagacggtgattatccagtagttgaaccacaacaggttgacttgatt
gatgttgcaccaaatcagatttctggtatttctgcttcattgattcctttcctggaacat
gatgatgcgaatagagcgttgatgggatcgaatatgatgcgtcaagcagttccattgttg
aaaccagaagctccgattgttggaacaggtttagaaaaacaagttgcgagtgactccaga
attttaattaatgctgaaggaaacggaacagtagaatacgttgatgcggtaaaaattacc
attaaatatgaaagaagtgaagatgctgatttagtatcattcgataccgctacgaaatca
tataaattaaccaaattccgtaagaccaatcagggaacgaccattactttaagaccaaac
gtaagagtaggtgataaagtagtaaaaggacaggttctttgtgatggttatgcaactgaa
aacggagaattggcacttggacgtaacttagttgttgccttcatgccttggaaagggtac
aactttgaggatgcgatcgttattaacgaaaaagtagttcgcgaagactggtttacttcg
atccatgttgatgaatattctctggaagttcgggataccaaattaggtatggaagaattg
acagcagatattccaaacgtttcagaagaagcaaccaaagatttagatgaaaacggaatg
atcagaattggagccgacgtaaaacctggtgacattatgattggtaagattactccaaaa
ggagaatcagatccgactccggaagagaaattattgagagcgatttttggagacaaagcc
ggagacgtaaaagatgcttcattgaaagcagattcatcgttgagaggagttgtaatcaat
aaaaaattattctcaagaaatatcaaagataaaaagaaaagatcggaagagaaattgaaa
ttagaagaaatcgaaaatacctacaaagggaaaaatgatgaccttcgaaatctgcttctt
gaaaaattaggaacacttgtaaacggtaaaacgtctcagggtgtaaataatgatcttgat
gaagaaatcatcggaaaaggcgtgaaatttactacaaaattacttcaatctgttgaagat
tatgtgaatgtaagtggagcagactggacggttgatgctgaaagaaatgagttgatcaag
caattgatccacaacttcaaaattaagtctaatgacttaaatggtgttaaaaaccgtgag
aagtttgctatctctatcggagatgaattacctgcaggaatcatcaaattagcgaaagta
tatgttgctaaaaaacgtaaactgaacgttggtgataaaatggcgggtcgtcacggtaac
aaaggtattgtatcaagaattgtacgtgaagaagatatgccgttccttgaagatggaact
ccggttgatatcgtattgaatccactgggtgtaccttctcgtatgaacattggtcagatc
tacgaaaccgttttaggatgggctggtaaaaaattaggtttaaaattcgcaacgccgatt
ttcgatggtgctaatattgaccaaattacagaatataccaagcaagcaaatcttccggaa
tttggtagtacttatctttatgatggtggtactggtgaaagattctctcaacctgcaacc
gttggaatcatttacatgttgaaattaggacacatggttgatgataaaatgcacgcacgt
tctatcggaccttattcattgattacgcagcaacctttgggtggtaaagcgcagtttggt
ggacaaagatttggtgagatggaggtttgggcgttggaagcatttggtgcttcgaatatc
cttagagaaatcttaactgtgaaatccgatgacgtgattggtagagctaaaacttacgaa
gcaattgcaaaaggagaagcaatgcctgaaccaggtattccggaatccttcaatgtattg
ttacatgagttgcaaggacttggtcttgatgtaagactggaagaataa
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integrated database retrieval system
