Corynebacterium jeddahense: CJEDD_01855
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Entry
CJEDD_01855 CDS
T08816
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cjh
Corynebacterium jeddahense
Pathway
cjh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJEDD_01855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjh03021
]
CJEDD_01855 (rpoC)
03400 DNA repair and recombination proteins [BR:
cjh03400
]
CJEDD_01855 (rpoC)
Enzymes [BR:
cjh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJEDD_01855 (rpoC)
Transcription machinery [BR:
cjh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJEDD_01855 (rpoC)
DNA repair and recombination proteins [BR:
cjh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJEDD_01855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WCZ37994
LinkDB
All DBs
Position
382278..386276
Genome browser
AA seq
1332 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDMSTLEAEMLMEKKEVEDDTNSEIADRAQKLEED
LAELEASGATAAARKKVQNAADKEMQHIREAGEREVERLDEIWTTFQKLAPKQMIIDENL
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELRTIIAEGKGQKKVRALKRLRVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGTRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKRMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMLKGPQEIGGE
GAYQPADENGPERGVYSSYREAIMAYDRGVLGLQAPIKVRIDHLRPTPEIEQEQFPDGWT
KGQAWMTETTLGRIMFNELLPFNFPYQEGAMVRKGGGSGKVLLGDIIQSMVEKYPMITVA
QVLDKMKDAGFYWATRSGVTISMSDVLILPNKTEVLEQYEKEAEAIERKFWEKGALTEEN
RYDRLVELWQDATNKVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTHQGVKVPVAEEVGGKFVRHDLVETSVSGRVVAADAKDAEGNVVLEAGTELSEERID
DLVAAGVTEVKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTITLEDEGNFWTLTIHPDD
GSDDVVYEKLSKRQGLAQVRRPMESNPDAFIERGLREGDHVSVGERLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDSGSTEFLPGTLVDLS
EARQVNAAAVADGGEPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDK
LIGLKENVIIGKLIPAGTGISRYRNIQVKPTEAARSAAYAIPTFGDSIYGDEGYGEFTGA
SVPMDEFGFEEL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagcttcgcatcggcctggccaccgccgacgacatc
cgccgttggtcccacggcgaggtgaagaagcccgagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgcatcttcggcccgacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgctacaagggcatcatctgcgagcgctgcggcgtc
gaggtgaccaagtccaaggtgcgccgcgagcgcatgggccacatcgagctcgccgccccg
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgcttgacctg
gcgccgaaggacctcgagcgcatcatctacttcgcggcgaacatcatcacctccgtcgac
gaggaggcgcgccacaacgacatgtccaccctcgaggcggagatgctcatggagaaaaag
gaggtcgaggacgacaccaactccgagatcgccgaccgcgcgcagaagctcgaggaggac
cttgccgagctcgaggcttccggcgcgaccgcggctgcccgcaagaaggtgcagaacgcg
gccgacaaggagatgcagcacatccgcgaggcgggcgagcgcgaggtggagcgcctcgac
gagatctggaccacgttccagaagctcgcgccgaagcagatgatcatcgatgagaacctc
tacgaggagctcgtcgaccgttacgaggactacttcaccggcggcatgggcgccgaggcg
atccagaccctcatccgcaacttcgacctcgacgccgaggcagaggagctgcgcaccatc
atcgccgagggcaagggccagaagaaggtccgcgcgctcaagcgcctgcgcgtcgtcgcg
gcgttccagcgctccggcaacgatccggccggcatgattctcgacgcgatcccggtgatc
ccgccggagctgcggccgatggtccagctcgacggcggccgcttcgccacctcggacctt
aacgatctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcatgatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgccgcggccgccccgtcaccggcccgggcacccgcccgctgaag
tccctgtccgacctgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggactactccggccgttccgtgattatcgtcggcccgcagctcaagctgcacgag
tgcggcctgccgaagcgcatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggacaacgactatgcgcagaacatcaagtccgcgaagcgcatggtcgagcgccagcgc
cccgaggtgtgggacgtgctcgaggaggccatctccgagcacccggtgctgcttaaccgc
gccccgacgctgcaccgcctgggcatccaggccttcgagccgaagctcgtcgagggcaag
gccatccagctgcacccgctcgcctgcgaggcgttcaacgccgacttcgacggcgaccag
atggctgtgcacctgccgctgtccgctgaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacattctgtccccggcgtccggcaagccgctggcgatgccgcgcctggac
atggtcaccggcctgtacttcctcaccatgcttaagggcccgcaggagatcggcggcgag
ggtgcgtaccagcctgccgacgagaacggcccggagcgcggcgtgtactcgtcgtaccgc
gaggcgatcatggcctacgaccgcggcgtgctaggcctgcaggcaccgatcaaggtccgc
atcgaccacctgcgcccgaccccggagatcgagcaagagcagttccccgacggctggacc
aagggccaggcgtggatgaccgagacgaccctcggccgcatcatgttcaacgagctgctg
ccgttcaacttcccgtaccaggaaggcgcgatggtgcgcaagggcggcggctccggcaag
gtgctgctcggcgacatcatccagtcgatggtggagaagtacccgatgatcaccgtcgcc
caggtactggacaagatgaaggacgccggcttctactgggcaacgcgttccggcgtgacc
atctccatgtccgacgtgctcatcctcccgaacaagaccgaggttctcgagcagtacgag
aaggaagccgaggccatcgagcgcaagttctgggagaagggcgcgctcaccgaggagaac
cgctacgaccgcctcgtcgagctgtggcaggacgccacgaacaaggtcggccaggccgtg
gaggatctctacccggacgacaacccgatcccgatgatcgtgaagtcgggcgccgccggt
aacatgcgccagatctggacgctggcaggcatgaagggcatggtcgtgaactcgcgcggc
gagtacatcacccgcccgatcaagacgtccttccgcgaaggcctctccgtgatggagtac
ttcaacaactcgcacggctcccgcaagggcctagcggataccgcgctgcgtaccgcggac
tccggctacctcacccgccgtctcgtggacgtggcgcaggacgtcatcgtccgtgaagag
gactgcggcacccaccagggcgtcaaggtgccggtggccgaggaggtcggcggcaagttc
gtgcgccacgacctcgtggagacctccgtgtcgggccgcgtcgtcgcggccgacgcgaag
gacgccgagggcaacgtcgtcctcgaggcgggcaccgagctgagcgaggagcgtatcgac
gacctcgtggccgccggtgtcaccgaggtcaaggtccgctccgtgctcacctgccagacg
ccgaccggtgtctgcgcgaagtgctacggcaagtccatggcgtcgggccagctcgtcgac
atcggcgaggccgtcggcatcgtggccgcccagtccatcggcgagccgggcacgcagctg
accatgcgtacgttccaccagggcggcgtcggcggcgacatcaccggcggcctcccgcgc
gtgcaggagctgttcgaggcccgcgtgccgaagaaccgcgccccgatcgcgtcggtggcc
ggcacgatcacgctcgaggacgagggcaacttctggacgctgaccattcacccggacgac
ggctccgacgacgtggtctacgagaagctgtcgaagcgccagggtctcgctcaggtgcgc
cgcccgatggagtccaacccggacgcgttcatcgagcgcggcctgcgcgagggcgaccac
gtgtcggtgggcgagcgcctgctgcgcggcgcggccgacccgcacgacgtgctcgaggtc
ctcggccgccgtggcgtggagaagcacctcatcgacgaggtgcaggcggtctaccgcacc
cagggtgtgtcgattcacgacaagcacatcgagatcatcatccgccagatgctgcgccgc
ggcaccgtcatcgactccggctcgacggagttcctgccgggtacgctggtcgacctctcc
gaggcgcgccaggtcaacgcggccgcggttgccgacggcggcgagccggcggagatgcgc
tcggagatcatgggcatcaccaaggcctcgctggccacggagtcctggctctccgccgcc
tccttccaggagacgacgcgcgtgctcaccgacgccgcgatcaacaagcgctccgacaag
ctcatcggtctgaaggagaacgtgatcatcggcaagctcatcccggccggtaccggcatc
tcccgctaccgcaacatccaggtcaagccgaccgaggcggcgcgctccgcggcgtacgcc
atcccgacgttcggcgattccatctacggcgacgaggggtacggcgagttcaccggcgcc
tccgtcccgatggacgagttcggcttcgaggagctctaa
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