Corynebacterium jeddahense: CJEDD_05165
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Entry
CJEDD_05165 CDS
T08816
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cjh
Corynebacterium jeddahense
Pathway
cjh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJEDD_05165 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjh03019
]
CJEDD_05165 (deaD)
03009 Ribosome biogenesis [BR:
cjh03009
]
CJEDD_05165 (deaD)
Enzymes [BR:
cjh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJEDD_05165 (deaD)
Messenger RNA biogenesis [BR:
cjh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJEDD_05165 (deaD)
Ribosome biogenesis [BR:
cjh03009
]
Prokaryotic type
rRNA helicases
CJEDD_05165 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WCZ38644
LinkDB
All DBs
Position
1054791..1056902
Genome browser
AA seq
703 aa
AA seq
DB search
MSISENATGGENEPDMNVSENQENPQDVAAEIVEAVIEDTRDAGVAEETGAAEDSVAIET
EGEVLKLHDEPSADAEQTEEPGNGFDTLGLPREVVEAVKRVGFEQPSPIQAQTIPLLMQG
RDVVGLAQTGTGKTAAFALPVLSKIDPGKRYPQALILAPTRELALQVSDSFQSFADHLGG
VHILPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEKGSLDISNLEFLVLDEADEMLN
MGFQEDVERILEDTPDDKQVALFSATMPNAIRRISRDYLNDPEEVTVKSETRTNTNITQR
YLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEEIAEKLRARGFSAAAINGDIAQQQ
RERTVDQLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTG
EAILFVTPRERRMLRSIERVTNAKIEEMDLPTVDEVNESRKEKFMDSITESLEASDLQVF
KTMVREYSANNNVPMDDIAAALATQALAGDEFLMKEPPRDKRDRRDRDRFDREDRRDRGR
GRYDDRDRGDRGDRGDRGSRGRRHDDSESFDTYRLDVGKRQHVRPGAIVGALANEGGLNS
KDFGRITIGGDFTLVELPKNLDPAVLDRLEDTRISGQLINIQRDHGAPRRGDRDDRGGRG
GHGGYRGGRDRDRDRDRDRDRGGRGGRDRDRGGYRGGRGRYDD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttccgaaaacgccaccggcggcgagaacgagccggacatgaatgtgtcggaa
aatcaggaaaacccgcaggatgtcgcggccgagatcgttgaggccgtcatcgaggacacc
agggatgcgggggttgctgaggagaccggcgccgcggaggactccgtggccattgaaact
gagggcgaggttctgaagcttcacgacgagccttcggccgacgccgagcaaaccgaagag
cccgggaacggcttcgacaccctcggcctgccgcgcgaggttgtcgaggccgtcaagcgt
gtcggcttcgagcagccctcgccgatccaggcgcagacgatcccgctgctcatgcagggc
cgcgacgtcgtcggactcgcgcagaccggcaccggcaaaaccgcggcgttcgcgctgccg
gtgctgtccaagatcgacccggggaagcgctacccgcaggcgctcatcctcgccccgacg
cgcgagctggcgctgcaggtttcggactcgttccagtcgttcgcggaccacctcggcggg
gtgcacatcctgccgatctatggcggccaggcctacggcatccagctttcggggctgcgg
cggggtgcgcaagtgatcgtcggtacgcctgggcgcgtgatcgaccacctggaaaagggt
tcgctcgacatctcgaacctggagttccttgtcctcgacgaggcggacgaaatgctcaac
atgggcttccaggaggacgtggagcgcatcctcgaggacacgcccgacgacaagcaggtc
gccctgttctcggccacgatgccgaacgcgatccgccgcatctcgcgcgactacctcaac
gacccggaagaggtcaccgtcaagagcgagacgcgcaccaacaccaacatcacgcagcgc
tacctgttcacggcgcaccgcaacaagctcgacgcgatcacccgcatcctcgaggtgacc
gagttcgaggcgatgatcgtgttcgtgcgcacgaagaacgagacggaggagatcgccgag
aagctgcgcgcccgcgggttctccgccgccgcgatcaacggcgacatcgcccagcagcag
cgcgagcgcaccgtcgatcagcttcgcgacggccgcctggacatccttgtggccaccgac
gtcgccgcccgcggcctggatgtcgagcgcatctcccacgtgctcaactacgacatcccg
aacgacacggagagctacgtccaccgcatcggccgcaccggccgcgcggggcgcaccggc
gaggcgatcctgtttgtcaccccgcgcgagcgccgcatgctccgctccatcgagcgcgtg
accaacgcgaagatcgaggagatggacctgcccaccgtcgacgaggtcaacgagtcgcgc
aaggaaaagttcatggactccatcaccgagtccctcgaggccagcgacctgcaagtgttc
aagaccatggtccgcgagtactccgcgaacaacaacgtgcccatggacgacatcgccgcc
gccctggccacccaggcgctcgccggcgacgagttcctcatgaaggagccgccccgcgac
aagcgcgaccgccgcgaccgggaccgcttcgaccgcgaggatcgccgggatcggggccgc
gggcgttacgacgaccgtgaccgtggcgaccgcggcgaccgcggcgaccgtggctcgcgc
ggccgccgtcacgacgactcggagagcttcgacacctaccgcctcgacgtgggcaagcgc
cagcacgtccgccccggggcgatcgtcggcgctctggccaacgagggcggcctgaactcc
aaggacttcggccgcatcaccatcggcggcgacttcacgctcgtggagctgccgaagaac
ctggaccccgcagtcctggacaggctcgaggacacgcgcatctccggccaactgatcaac
atccagcgcgaccacggcgccccgcgtcgcggcgaccgtgacgaccgcggcgggcgcgga
ggccacggcggctaccgcggcgggcgtgaccgggaccgcgaccgggatcgagaccgagac
cgtggcgggcgcggcggacgcgaccgcgatcgcggcggctaccgcggcgggcgcggcagg
tacgacgactag
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