Corynebacterium jeddahense: CJEDD_07435
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Entry
CJEDD_07435 CDS
T08816
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cjh
Corynebacterium jeddahense
Brite
KEGG Orthology (KO) [BR:
cjh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjh03019
]
CJEDD_07435 (hrpB2)
Enzymes [BR:
cjh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CJEDD_07435 (hrpB2)
Messenger RNA biogenesis [BR:
cjh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CJEDD_07435 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
ResIII
SLFN-g3_helicase
AAA_25
ABC_tran
T2SSE
AAA_16
Zeta_toxin
HA2_N
NACHT
PhoH
Motif
Other DBs
NCBI-ProteinID:
WCZ39080
LinkDB
All DBs
Position
1543387..1547316
Genome browser
AA seq
1309 aa
AA seq
DB search
MNESAHQSKPQLYEALDGVPLADVRRFRRRLKNASSPEALAAIAADVEAARDVVAKRDAL
IPAIEYPENLPVSARRDDIMELIRDNQVVIIAGETGSGKTTQIPKMLLELGRGRRGVIGH
TQPRRLAARTVAERIADELGQDIGESVGYAIRFDDRVSDSTAVKLMTDGILLAEMQRDRF
LNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIVTSATIDPEAFAAHFADADGT
PAPIIEVSGRTYPVEIRYRPLVEQVQAKDGSVKEIDTDMIDGVVDACAELMREGDGDILC
FFASERDIRDCMEAIEKKRWRGVEVVPLFGRLSNAEQHRVFAPHSGRRIVLSTNIAETSL
TVPGIHYVVDTGLARISRYSTRTKVQRLPIEEVSQASANQRSGRSGRTADGIAIRLYSEE
NFEARPAFTDPEILRTNLASVILQMISLRLGDVAEFPFIQPPDPKSVRDGLQILHELGAI
GDKERDGTPVLTGIGRDIARIPVDPKMARMLVEANRLGVLDDVTVIVANMTIQDVRERPL
EFQAQADQAHARFKDKESDFLSALKLWDYIGESRDELTGNAFRKRMKREFLHYMRIREWF
DLVRQLRDVERQLGWSRAENVAGERDANAIHKSLLTGLLSNIGARDGNSKEFQGARGTRF
VIFPGSSLSKKPPEFVMAAELVETSRLFARDVAKIEPEWVEAAAGELMKHSYSEPVWSRK
RSAAMVHQKSMLYGVTIVRDRLVPYHRVDPAGARAMFIRHALLEGDWNRHHTFIDHNEAL
LAEAASVEEKVRRRGLVVDEDTLFEFYDSRLPADVTTARHFDSWWKKQRAKDKHYLDFDP
SSLLDDDGVDAGAAAFPEVRRQGSIDYALRYKFEPGDPFDGVTVEVPVPLLANLREDGFD
WLVPGLRPELAAEMIRTLPKALRKTVVPAPDFAERALEVIAESDTGENAPFTDALADALR
SLGGRGINGSDFNPDALPAHLRVTYAAIDRRGKVVDHDKDLAALKRRQAGKIRSSVSQAG
RTSESEAVQKWTADTLGAVPETVTTTIDGNDVDAYPALEATKDGVKVTVHPTKAAAEASM
VTATLTLLLREISVNAAQMTKGLPLRHKVAVDRYPHGGAAGLVDDARIAVIRDLMFAHGG
PVRSPEEFEALAAEIKPEVPGAVRRVVVTLAPALAEYANLAAELEQWDGPAIDDMRGQLA
FFLPKHAVTVHGIGHLQHLPRYIDAMRIRLEDMRLDPDRDADRQSVVDSVKRYLAAKMQR
LPAGREKTKAYKDILWQIEELRVSLFAQRLGTPKPVSQRRIEKKIDALA
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagtccgcacatcaaagcaaaccgcagctgtacgaggcgctcgacggcgtcccg
ctcgccgacgtccgccggttccggcgccggctgaaaaacgcctcgagcccggaggccctc
gccgcgatcgctgcggatgttgaggcggcgcgggacgtcgtcgccaagcgagacgccctc
atccccgccatcgagtaccccgagaacctcccagtgtccgctcggcgcgatgacatcatg
gagctcatccgcgacaaccaggtagtcatcatcgcgggcgagacgggttcgggcaagacc
acccagatcccgaagatgctcctcgagctcgggcggggtcggcgcggggtcatcggccac
acgcagccgcgcagactcgccgcgcgcacggtggccgagcgcatcgccgacgagttgggc
caggacatcggcgaatccgtcggctacgccatccgcttcgacgaccgggtgtccgactcc
accgcggtgaagctcatgacggacggcatcctgctcgcggagatgcagcgcgaccgcttc
ctcaacgcctacgacacgatcatcatcgacgaggcacacgagcgcagcctcaacatcgac
tttctgctcggctaccttaagcgactgctgccgaagcggccggacctcaaggtcattgtc
acctccgcgacgatcgacccggaggcgttcgcggcgcacttcgccgacgccgacggcacc
ccggcgcccatcatcgaggtctccgggcgcacgtacccggtggagattcgctaccggccg
ctcgtggagcaggtgcaggcgaaggacgggtcggtcaaggagatcgacaccgacatgatc
gacggcgtcgtggacgcgtgcgccgagcttatgcgcgagggagacggggacatcctctgc
ttcttcgcctccgagcgcgacatccgcgactgcatggaggcgattgagaagaagcgctgg
cgcggcgtcgaggtcgtgccactgttcggccggctttccaatgccgagcagcaccgcgtg
tttgccccccactcgggcaggcgcatcgtgctgtccaccaacatcgccgagacgtcgctc
acggtgcccggcatccactacgtggtggacacaggcttggcgcgcatctcgcgctactcc
acgcgcacgaaggtgcagcgcctgcccatcgaggaggtctcgcaggcgtccgccaaccag
cgttcgggccgctccgggcgcaccgcagacggcatcgccatccgcctgtactcggaggag
aacttcgaggcccgccccgcgttcaccgacccggaaatcctgcgcaccaacttggccagc
gtgatcctgcaaatgatctcgctgcgcctcggcgacgtcgccgagttcccgttcatccag
cccccggatccgaagtccgtgcgcgacggcctgcagatcctccacgagctcggcgcgatc
ggcgacaaggagcgcgacggcacgcccgtgctcaccggcatcggccgggacatcgcccgc
atccccgtcgacccgaagatggcgcgcatgctcgtcgaggcgaaccggctcggcgtgctc
gatgacgtcaccgtcatcgtcgcgaacatgaccatccaggacgtgcgcgagcgcccactg
gagttccaggcgcaggcggatcaggcgcacgcccgcttcaaagacaaggagtcggacttc
ctctccgcgctcaagctgtgggactacatcggcgaatcccgcgacgagctcacgggcaac
gccttccgcaagcgcatgaagcgggagttcctccactacatgcgcatccgcgagtggttc
gacctcgtgcggcagctacgcgacgtggagcgccagctgggctggtcccgcgccgagaac
gtcgccggcgagcgcgacgcgaacgcgatccacaagtccctgctcaccggcctgctttcc
aacatcggcgcgcgcgacgggaactcgaaggagttccagggcgcgcgcgggacgaggttc
gtgatcttccccgggtcgtcgctgagcaagaagcccccggagttcgtcatggccgcggag
ctcgtggagacttcgcgcctgttcgcgcgcgacgtggccaaaatcgagccggagtgggtc
gaggcggccgcgggcgagctgatgaagcactcctactccgagccggtgtggtcccggaag
cgctccgcggcgatggtgcaccagaaatcgatgctctacggcgtgaccatcgtgcgcgac
cggctcgtgccctatcaccgcgtcgaccccgctggggcgcgcgccatgttcatccgccac
gcgctgctcgagggcgattggaaccgccaccacacgttcatcgaccacaacgaggcgctc
ctcgccgaggccgcctccgtggaggagaaggtgcgccgccgcggcctcgtcgtcgacgaa
gacacgctgttcgagttctacgactcccgcctgcccgccgacgtgaccaccgcacgccac
ttcgactcgtggtggaagaagcagcgggcgaaggacaagcactacctcgacttcgacccg
agcagtttgcttgacgacgacggcgtggacgccggcgccgccgccttccccgaagtgcgg
cggcagggttccatcgattacgccctgcgctacaagttcgagcccggcgacccgttcgac
ggcgtgaccgtggaggtgccggtgcccctgctggcgaacctccgcgaggacgggttcgat
tggctcgtgcccggcctgcgccccgagctcgcggccgagatgatccggacgctgccgaag
gcgctgcgcaagaccgtcgtcccggcgcccgacttcgccgagcgcgccctcgaggtcatc
gccgagagcgacactggcgagaacgccccgttcaccgacgcgctcgcggacgccctgcgc
agcctgggcgggcgcggcatcaacggctccgacttcaacccagatgcgctgcccgcccac
ctccgggtgacgtacgcggcgatcgaccgccgcggcaaggtggtcgaccacgacaaggac
ctcgccgcgctcaagcgccggcaggccggcaagatccggtcctccgtctcccaggcgggg
cggacgtcggagtccgaagccgtgcagaagtggaccgccgacacgctcggcgcggtcccg
gaaaccgtcaccaccaccatcgacggtaacgacgtcgacgcctaccccgccctcgaggcg
acgaaggacggggtgaaggtgaccgtccacccgacgaaggcggccgccgaggcgtcgatg
gtcacggcgacgctcacgctgctgttgcgcgagatctccgtcaacgccgcgcagatgacg
aaggggctgccgctgcgccacaaggtggccgtggaccgctacccgcacggcggcgcggcc
gggctcgtcgacgacgcgcgcatcgccgtcattcgcgaccttatgttcgcgcatggcggg
ccggtgcgctcgcccgaggaattcgaggcgctcgccgccgaaatcaagccggaggtgccg
ggcgctgtgcgccgcgtcgtagtcacactcgccccggccctggcggagtacgccaacctc
gccgccgagctggagcagtgggacggccccgccatcgacgacatgcgcggccagctcgcg
ttcttcctgccgaagcacgcggtgaccgtccacggcatcgggcacctgcagcacctgccc
cgctacatcgacgcgatgcgcatccgcctcgaggacatgcgcctcgacccggaccgcgac
gccgaccggcagagcgttgtcgactcggtgaagcgctacctcgccgcgaagatgcagcgg
ctcccggcggggcgggagaagacgaaggcgtacaaggacatcctctggcagatcgaggaa
ttacgtgtgagcctgttcgcgcagcgcctgggcacgccgaaaccagtgagccagcgtcgc
atcgagaagaagatcgacgcgctcgcctag
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