Campylobacter jejuni subsp. jejuni IA3902: CJSA_1027
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Entry
CJSA_1027 CDS
T01854
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cji
Campylobacter jejuni subsp. jejuni IA3902
Pathway
cji03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJSA_1027 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cji03400
]
CJSA_1027 (mfd)
Enzymes [BR:
cji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJSA_1027 (mfd)
DNA repair and recombination proteins [BR:
cji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJSA_1027 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
Josephin
Motif
Other DBs
NCBI-ProteinID:
ADC28666
LinkDB
All DBs
Position
complement(1018572..1021508)
Genome browser
AA seq
978 aa
AA seq
DB search
MQASFYEYLQNPKICELLLCKDEKQADLLAQVSRFKGLKTFVLPDFRAQFGDDLRAFSKE
LFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHIDKKQNFDLKCFEDEISRL
GYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELE
YFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFDYLELDFLACEKF
DINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELED
TQNIHFVKSDLRLNLISPEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKF
LGLEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
KEKLKTKLLAIASKIVIMAAKRSLVQAKKITVDLNRQADFITSAGFIYTSDQEKACHEIL
QDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRF
DPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFG
VKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD
ALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFL
IEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLEDELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEV
YEIEGEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAK
SKDDDDILEAILTHLRKA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattttatgaatacctacaaaatccaaaaatttgtgaacttttgctttgt
aaagatgaaaaacaagcagatttacttgctcaagtttcacgatttaagggtttaaaaacc
tttgttttacctgattttagagcgcagtttggagatgatttaagggctttttccaaagaa
ctttttgatctttgcaagattttaaatgcttatcataaagaagaagaaaaaaaaatcctt
atttctcctttaaatactgttttaaaaaaacttccttcaaaaaaacatttacaaaattat
catatcgataaaaaacaaaattttgatttgaaatgttttgaagatgaaatttcaagattg
ggatacgaatttgtagatatagttcaggataaaggtgaaatttcaattcgtgcggatatt
attgatattttttgtatcaatgaagaaaatcctattagaattttactttttggcgaagag
attgaaagcataagatattttgatttgcaaagtcaaaagtctattcctaatgaactagaa
tattttgaaatttgtccttttttaaaatattttgacaaagaaaattatgaaatttttaag
gacaaattagaagattttcaaagcgatactttaatacatgatatcaattctttaggattt
tggtgtattgatgatttttttgattatttagaacttgattttttagcttgtgaaaagttt
gatattaatgaatatgaaaaagatataagttttgtgaatgcaaaaattttacctcaagct
aaaaaatttaaagaattgcaaagttcttacaataaagatttttttgaatttcataaaaat
aaaaaaatcacacttttagctaaaaatgaagctttgtttaaagctttggagcttgaagat
actcaaaatatccattttgtaaaaagtgatttaaggcttaatcttattagtcctgaagag
ctaatcatttctttaaatcaaaaagaaaaacaaaaaacaagaaaaaaagctagtttgatt
atagatgagcttaaaaatggggattatatagtgcacgaagattatggagtgggcaaattt
ttaggtcttgagatgatagtgataagcggagcaaaaaaagagtttgttgctatagagtat
caaaattctgataagcttttattaccagtggaaaatctttatttgattgataaatatttg
ggtgtgagtggatctattccaagcttagataaactaggtaaaacaagctttattaaactt
aaagaaaaattaaagactaaacttttagccatagcttctaaaattgttattatggcggct
aaaagatctttggtgcaagcaaaaaaaattacagtggatttaaatagacaagctgatttt
ataactagtgcaggttttatttatacaagcgatcaagagaaagcttgtcatgaaattttg
caagattttcaaagtggaaaagttatggataggcttttaagcggtgatgtgggttttgga
aaaacagaagttgccatgaatgctatttatccagtggttaaaagtggattttgcgcattt
ttatttgcgcctacaactttgctttctcatcagcattataaaaccttaaaaaagcgtttt
gatccttttgatataaaggtttttaaactggatcgctttacaagtagtgcagaaaaaaaa
caagttttacaaaatttaaaagaaaataaagcttgtgtagttgtaggaactcatgcgctt
ttaagtgtagaatgtgaaaatttagctcttgttattattgatgaagagcataaatttgga
gtgaagcaaaaagaaaagcttaaagaaatcactcaaaattcacatattttatccatgtca
gcaacccctataccaagaagcttaaatcaagctttaagttctataaaatcttatagtgtt
ttacaaactccaccagaagatagaatggatgtaagaacttttgtcaaagaaaatgatgac
gcacttttaaaagaagctatagcaagagagttaagacgtggtgggcaaattttttatatt
cataatcatattgcaagtatagagcaatgtaaaaagcatctattagaacttttttctact
ttgcgtattttgattttacattctaaaatcgatgccaagatgcaagaagaagaaatgttg
aaatttgaaaacaaagaatatgatttgcttttaagtacctctatcgtagaaagtgggatt
gatttaccaaatgcaaatactatcatagtagaaaaaagcgatcgttttggcatggctgat
ttgcatcaattgcgtgggcgtgtaggaagaagtgataagcaaggttattgttatttttta
attgaagataaaaatgctatcacaaaagatgctttaaagcgtctagtttccttagaaagt
aattcttttttaggcgcaggttctattttggcttatcatgatcttgaaattcgtggcggt
ggaaatttattaggcgtagatcaaagtggacatattgagcaaattggatatagtttatat
cttaaaatgttagaagatgaacttaatgctttaagtaaaaatgaagtggatcaaaaagaa
aataaacttgatttaaaactcaatgttaatgcctttttaaacagcgaacttatcagcgaa
gatcgcttaagattagaactttatagaagacttagcaagtgtgagcaagttcatgaggtt
tatgagatcgaaggtgaaattgaagatcgctttggaaaacttgacatttatactaagcaa
tttttatctttgattactattaaaattttagctttaaataaatttaaaagcattagtaac
tatgagcaaaatattcaatttactgctttaaatgatgaaaaagaactcatcaaggcaaaa
agcaaagatgatgatgatattttagaggcaattttaacgcatttaagaaaggcttaa
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