Campylobacter jejuni subsp. jejuni IA3902: CJSA_pVir0012
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Entry
CJSA_pVir0012 CDS
T01854
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cji
Campylobacter jejuni subsp. jejuni IA3902
Brite
KEGG Orthology (KO) [BR:
cji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cji03032
]
CJSA_pVir0012 (topA)
03400 DNA repair and recombination proteins [BR:
cji03400
]
CJSA_pVir0012 (topA)
Enzymes [BR:
cji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CJSA_pVir0012 (topA)
DNA replication proteins [BR:
cji03032
]
Prokaryotic type
DNA Topoisomerases
CJSA_pVir0012 (topA)
DNA repair and recombination proteins [BR:
cji03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CJSA_pVir0012 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
DUF6293_C
Motif
Other DBs
NCBI-ProteinID:
ADC29280
LinkDB
All DBs
Position
pVir:9207..11174
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AA seq
655 aa
AA seq
DB search
MENTIIIIESPNKREKIEKITGAKVYATKGHFKSLSKNFLKEYENYEPIFDFSSDETKKR
MNAIFADCKNKNVIIATDPDREGYGIAYLFYEVIKNIAKSIKRAEFHEITESGINKGLKN
AVEFSKSNLNDFEAFKARIVGDKLVGFIMSPKYINKMNDKNISVGRVQTPALSLIVEREK
AIQDFLNDDNNKKLDYKIKAKLEKDGIVFYANNPNLYPNKEEALEKIESLRSKNAKLYTI
ETKKSEIKPAQPFRTSQFQEKANKIFGFAPDKSMALAQKLFEKGLITYHRTDSNALSVEF
LNEVEAFFKEKQWYQKREYKAGDQSQAEAHEAIRISHLHSFEDIEKIAREENLSDDEKNT
YTLIYLNSIQSQAKNAINEITSYDFNIGILSFKTNISKCIDKGFKGAFDFKEEDEKDEKD
DTQELELNIKEGEEIQVLDFELIEVKKQAPRRYKESNFISLLEKEGIGRPSTYASFLKTL
LDREYVELATKGKNKEIVATKKGISLIDFLNENDDEWITKSEFTKQMEEILDTISKGNLQ
YIDFIKPLHQKMEFIHIDDSDQIRKPSEKQIAFAEKLAKENNLELPKDYKENIKVCMDFL
EKAKENAKPLPASAKQIAFAEKLAKENNLELPKDYKENIKVCSSFIDEAIKKNKK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatacaattattattatagaaagtcctaataaaagggaaaaaatagaaaaaatc
acaggggctaaggtttatgctactaaagggcattttaaaagtttaagtaaaaacttttta
aaagaatatgaaaactacgagcctatttttgatttttcaagcgatgaaaccaaaaaaaga
atgaatgctatttttgcagattgtaagaataaaaatgtgattatagctacagaccctgat
cgtgaaggttatggtatagcttatttattttatgaagtgataaaaaacattgctaaaagt
attaaaagagcagaatttcacgaaattacagaaagtgggatcaataaaggcttgaaaaat
gctgtagagttttcaaaaagtaatttaaatgattttgaagcatttaaagcaagaattgta
ggcgataaattggtgggttttataatgtcgcctaagtatattaataaaatgaatgataaa
aatatttctgtaggaagggtgcaaacacctgctttatccttaattgttgaaagagaaaaa
gccatacaagattttttaaacgatgataataataaaaaactagattataaaattaaagca
aaattagaaaaagatggcatagttttttatgcaaataatcccaatctttatccaaataaa
gaagaagctttagaaaaaatagaaagtttaaggagtaaaaacgcaaaactttatactata
gaaactaaaaaaagcgaaataaaaccagcacagccctttagaacttcacaatttcaagaa
aaggctaataaaatctttggttttgctcctgataagtcaatggcattagctcaaaaactc
tttgaaaaaggtttaattacttatcatagaaccgatagtaatgctttgtcagttgaattt
ttaaatgaagttgaagctttttttaaagaaaaacaatggtatcaaaaaagagaatataaa
gcaggagatcaaagtcaagcagaagcacacgaagctataagaatatcgcatttacacagc
tttgaagatatagagaaaattgctagagaagaaaatcttagtgatgatgaaaaaaatacc
tatactttaatttatttaaactcaatacaaagccaagccaaaaatgctattaatgaaatt
acaagctatgattttaacataggtattttaagttttaaaaccaatatcagcaaatgtatt
gataaaggttttaaaggggcttttgattttaaagaagaagacgaaaaagatgaaaaagac
gatactcaagaactagagcttaatataaaagaaggcgaagaaatacaagttttagatttt
gaattaattgaagttaaaaaacaagccccaagaagatataaagaaagcaattttatctcc
cttttggaaaaagaaggcataggacgccctagcacttatgcaagttttttaaaaacttta
ttagatagagaatatgtagaattagctactaaaggaaaaaacaaagaaatagttgcaact
aaaaaaggaatatcattaattgattttttaaatgaaaacgatgatgaatggatcacaaaa
tcagaattcacaaaacaaatggaagaaattttagacactatttcaaaaggaaatttgcaa
tatatcgattttattaaacctttacatcaaaaaatggaattcatacacattgatgatagc
gatcaaataagaaaacctagtgaaaagcaaatagcctttgctgaaaaacttgctaaggaa
aataacttagaattaccaaaggactataaagaaaatataaaagtttgtatggattttctt
gaaaaagctaaagaaaatgctaaacctttacctgcgtcagctaagcaaatagcctttgct
gaaaaacttgctaaggaaaataacttagaattaccaaaggactataaagaaaatataaaa
gtttgttcttcttttattgatgaagcaataaaaaagaataaaaaataa
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