Corynebacterium jeikeium: jk1490
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Entry
jk1490 CDS
T00255
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjk
Corynebacterium jeikeium
Pathway
cjk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
jk1490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjk03400
]
jk1490 (mfd)
Enzymes [BR:
cjk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
jk1490 (mfd)
DNA repair and recombination proteins [BR:
cjk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
jk1490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
FKBP_C
Motif
Other DBs
NCBI-ProteinID:
CAI37663
UniProt:
Q4JU44
LinkDB
All DBs
Position
complement(1752969..1756745)
Genome browser
AA seq
1258 aa
AA seq
DB search
MEDRLLAMSQTATPKANANRTSNPAPSLAGLLKAAAQDGKLRGMMTHLGEGALHMQAPEG
AWPFAVGTLAQRTPLLVVTATGRQAQDLTTVLRYMLGDRVELFPSWETLPHEKLSPAVET
VSTRMRVLRRLHEGDENLQVVVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRLQ
ELGYTHVDVVGKRGHFAIRGGIVDIFPATEEMPVRVDFWGDEITEVRAFSVGDQRTIPGV
EPDQVMVYACRELIVTDEVASKAKNLAQEHAGNAELAEILDKISQKIQVQGMESLIPALH
TAELVALPELMPEGTHTLVMAPAAVERRAHDLRETGQQFLEAGWDVAAMGGSAPMEGVAY
LSIDAVQKVQQKLGRPWWTLSTLGMADFDADTSDVLELNYDSAPRPHGEMEAIGAVMSDI
RKRVESGGRVAFAAPTPAVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADE
PAPHQVSIYHAVAYEGLVFPFAGDDKRPSLLFFTETDLTGNRVDAKATGKRKPAKKRNRV
DPLALEPGDLVVHDSHGIGKFVKMTERTVGKGPDASRREYLVLEYAPSKRGGPGDQLYVP
MDQLDMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLYASRQAAPGYAFA
ADTPWQREMEDAFPFTETEDQYNAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFK
AVQSGKQVAVLVPTTLLAQQHYNTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTV
DIVIGTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLE
MSMAGIREMSTILTPPEDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQ
TAADIRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLI
VENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMA
VAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKE
IRIDLPVDAHIPAEYIASERLRLEAYRKFAEVQDEEQIEKVLEELRDRYGKPPEQIQMLA
VLSRLRLLCRDLQVTEVVTTGSKISFSPIELQDSTQVRLKRLFPAANYRATTKIVLIPAP
KRGQGMRAVPLRDTELVQWCADALTQLAGIPIRNMAGGAGRGSDKGSDKGSGKDKGTS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
gtggaggatagactgttggccatgagtcagacagccacgcccaaagccaacgccaaccgc
acttcaaatccggcgcccagcctggcggggctgctgaaagccgccgcgcaggacgggaaa
ctgcgcgggatgatgacgcacctgggggagggggccctgcacatgcaagccccggagggt
gcgtggcctttcgcggtcggcacgctggcgcagcgtaccccgctgctagtggtgacagcc
acggggcgccaggcccaggacctcaccacggtattgcgctacatgctgggggatcgcgtg
gagctgttcccgtcgtgggagactctgccgcacgagaagctttccccggctgtggagacg
gtgtccacccgtatgcgcgtgctgcgccgcctgcacgagggcgacgagaacctgcaggtc
gtggtggctccgacccgcgcggcggtgcagcccgtgcagtcgaacctgggtgaggtcacc
ccggtgcggttgaaggtgggggaggaaatagacttcgattccctcacccaccggctgcaa
gagctcggctacacgcacgtggacgtggtgggtaagcgcggccacttcgctattcgcggt
ggcatcgtggatatcttccccgcgaccgaggagatgcccgtccgcgtggacttctggggc
gacgaaatcacggaggttcgcgcctttagcgtcggcgaccagcggaccatccctggggtg
gagccggaccaggtgatggtttatgcatgccgggaattgattgtgacggacgaggtggcg
tcaaaagccaagaaccttgcccaagagcacgccggcaacgcggagttggccgagatcctc
gacaagatcagccagaaaatccaggtgcaggggatggaatcgctgatcccggcgctgcac
acggccgagctggtggcactgccggagcttatgccggaaggtacgcacacgctggtgatg
gcacccgcggcagtcgaacgccgcgctcacgacctgcgcgaaaccggccagcagttcctt
gaggccggttgggacgttgcggcaatgggcggctcggcgccgatggagggcgtggcttat
ctttcgatcgacgcggtgcagaaggtgcagcaaaagctggggcggccctggtggactttg
tctacgctcgggatggcggattttgacgccgacacttccgatgttttggagctcaactat
gactcggcgccccgaccgcacggcgagatggaggccatcggtgcagtgatgagcgacatc
cgcaagcgcgtggaatccggtggacgggtggccttcgcggccccaaccccggccgtggcg
gcccgcatgctgcgacgtttccaagaagctggcatcgcggccgaggcgatcggtgtggat
ctcagtggtagccggggcctggggcggatcaagaagtccaagcacacgaccgccgacgag
cccgcgccacaccaggtgagcatctaccatgcggtggcctatgaggggctggtgttcccc
ttcgccggggacgacaagcgccctagcctgctgttcttcacggaaacggacttgactggc
aaccgcgtggacgcgaaggccacgggcaagcgcaagcccgcgaagaaacgtaaccgcgtg
gatccgctggcactggagccgggcgatctggtggtgcacgattcccacggcatcggcaag
ttcgtgaagatgacggaacgcacggtcggcaaggggccggatgcctctcgccgcgaatac
ctagttctggagtacgcccccagcaagcggggcggaccgggcgatcagctctacgtgccg
atggaccagctggatatgctgtcgcgctacgtcggcggggaaaagccggcgctgtcaaag
atgggtggtgcggattggaagaacaccaaacgcaaagcccgcggtgccgtgcgcgagatt
gcgggcgagttggtgcagctttacgccagccgccaggccgcgccgggctacgcatttgcc
gcggatactccctggcagcgggagatggaagatgccttcccctttacggaaaccgaggat
cagtacaacgccatcgaggctgtgaaggccgacatggaaaagccggtgccgatggaccgc
gtgatcgtcggcgacgtgggctatggcaagaccgaggtggcggtgcgcgccgcattcaag
gccgtgcagtccggcaagcaggtggccgtgctggtgccgaccaccctgttggcgcagcag
cactacaacacgtttagcgagcgcatgcaggactttcccaccactatcaaggagctatcg
cgctttaccaccccggcggaatccaagaaggtcatcgccggcatggccgacggcacggtg
gacatcgtgatcggtacccaccgcctgctgcagacgggcgtgcattggaagaacctgggg
ctgatcatcgtggacgaggagcagcgcttcggtgtggagcacaaggagcacatcaagtcg
ctgcgcacccacgtggacgtgctgacgatgtctgcgaccccgattccccgcacgctggaa
atgtcgatggcgggcatccgtgagatgtcgaccattctcaccccgccggaggatcgtcac
cccgtgctgacgtatgtgggtgcgcaggaggataagcacgtggctgcggctatccgccgc
gagctactgcgtgacggccaggtgttctacgtgcacaacaaggtccgcagtattgagcag
accgccgcggacattcgccgcctggtaccggaggcccgcgtggtggtcgcacacggccag
atgagcgaggaacagctagaaaccacggtgaagggtttctgggatcgcgagttcgacgtg
ctggtgtgcaccaccatcgtggagacaggcctggatatcgccaatgccaacaccctgatc
gtggagaacgcccaccacatggggctgtcccagctgcatcagctgcgcggccgcgtgggg
cgctcccgcgagcgcggttacgcctacttcctatacccgaagggggaggtgctgaccgag
acctcttacgaccggctgacgaccatcgcccagaacaacgacctgggcgcaggcatggcc
gtggccatgaaggacctggagatgcgcggtgctggcaacgtgctgggcgccgagcagtct
ggtcacatcgccggagtaggcttcgacctctacgtccgcttggtgggcgaagcagtggag
gcgttccgcgcgatggcagacggtaagcccgtcgacggccgagaagaggaaaagaaggag
atccgcatcgacctgccggtggatgcacacatcccagccgagtacatagcatcggagcgc
ctgcgcctggaggcctaccgcaagttcgccgaggtgcaggatgaggagcagatcgagaag
gtgctcgaggagctgcgcgaccgctacggcaaaccgccggagcagatccagatgctcgcg
gtgctctcgcgcctgcgcctgctgtgccgagacctgcaggtcacggaggtggtgaccacg
ggctcgaagatcagtttcagccccatcgagctgcaggattccacccaagtgcgtctgaag
cgcctattccccgcggcgaattaccgcgcgacgaccaagattgtgctgatcccggcgccg
aagcgcggtcagggcatgcgcgcggttccgctgcgcgatacggagctggtgcagtggtgc
gccgatgcgttgacgcagctggctggcattccgattcgcaacatggcgggcggtgccggc
aggggctcagacaagggctcagacaagggctcaggcaaggataagggcacgtcctaa
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integrated database retrieval system
