Campylobacter jejuni subsp. jejuni M1: CJM1_0465
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Entry
CJM1_0465 CDS
T01855
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cjm
Campylobacter jejuni subsp. jejuni M1
Pathway
cjm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJM1_0465 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjm03021
]
CJM1_0465 (rpoB)
03400 DNA repair and recombination proteins [BR:
cjm03400
]
CJM1_0465 (rpoB)
Enzymes [BR:
cjm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJM1_0465 (rpoB)
Transcription machinery [BR:
cjm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJM1_0465 (rpoB)
DNA repair and recombination proteins [BR:
cjm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJM1_0465 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADN90680
LinkDB
All DBs
Position
438234..442361
Genome browser
AA seq
1375 aa
AA seq
DB search
MLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPIHDP
QNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKE
QEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIPDR
GSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKFLTE
FNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYLANP
IIDKESGEVLFDSLTLLDESKLAKIKEQKSFDIANDLANGVDAAIINSFAQDGETLKLLK
QSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHKLG
LEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAK
MQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKR
RLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVE
APYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARRE
EVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQII
ARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVK
KGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVH
IYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGE
VKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKE
KMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRF
TLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYI
ATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILE
SHLGLIGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNY
ARDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMYM
LKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLT
IKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgttagataataaattaggaaatcgtttaagagtagacttctcaaacatttcaaaacaa
atagaaatcccaaatcttctacaattacaaaaaaagagttttgattattttttaaatctt
gataatggtgaaagtggtatagaaaaagtttttaaatcaatttttcctattcatgatccg
caaaatagattgagtcttgaatatgttagtagtgaaataggcaagccaaaatataccatt
cgcgaatgcatggaaagaggtttgacttattctgtaaatttaaaaatgaaaatccgtctt
actctgcatgaaaaagatgaaaaaacaggggaaaaagttggcgtaaaagatattaaagaa
caagaaatttatatccgcgaaattcctttaatgacagatcgtgtatcttttatcattaat
ggggttgagagggtggttgtaaatcaattacatagaagccctggtgttatttttaaagaa
gaagaaagctcaacggttgcaaataagcttgtttatacagcacaaattattcctgatcgt
ggttcgtggctttattttgaatacgatgccaaagatgttttgtatgtaagaatcaacaag
cgtagaaaagttcctgtaactatgctttttagagctttagggtataaaaaacaagatatt
attaagttgttttatcctattcagactatacatgtgaaaaaagataaatttttaacagaa
tttaatccaaatgattttatggatagaatagaatatgatattaaagatgaaaaaggaaaa
atcgttcatcaagctggaaaaagacttacaaagaaaaaagcagaacagcttattaaagac
ggtttaaaatggatagaatatcctgtagaaattttacttaatcgttatttagcaaatcct
attattgataaagaaagtggagaggttttatttgattctttaactttgttagatgagagt
aagcttgctaagattaaagagcaaaaaagttttgatatagcaaatgacttggctaatggc
gttgatgcagcgattattaactcctttgctcaagatggagaaactctaaaacttcttaaa
caaagtgaaaatatcgatgatgaaaatgatttagctgcgattagaatttacaaagttatg
cgcccaggtgaacctgtggtaaaagatgcagcgaaggcttttgtaaatgatttattcttc
aatcctgaaagatacgatcttaccaaggtaggtcgtatgaaaatgaaccataaattaggt
cttgaagtacctgagtatgttactgttttgactaatgaagatattattaaaactgcaaaa
tatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcatttaggaaat
cgtcgtatccgttctataggtgaacttttggccaatgaacttcatttaggtcttgcaaaa
atgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgataaagtaatg
ccttatgatttaatcaatcctaaaatgattactacaactatcattgaattttttacagga
ggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttactcataagcgt
cgtttatcagcgcttggtgaaggtggacttgtaaaagaaagagcaggttttgaagtgcgt
gatgttcacgcgacacattatggtagaatttgtccagttgaaacacctgaaggtcaaaat
attggtttgattaacactctttctacttatgcaaaagtaaatgaacttggctttgttgaa
gcgccatatagaaaagttgtaaatggtaaagtgactaatgaagttgtttatcttacagcg
acacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgctaaaggcaat
atagtagaagaatttgttgaggctagacaagatggtgaaactatacttgcaagacgcgaa
gaagtgcaattaattgatctttgctcaggtatggttgttggggttgcggcttctttgatt
ccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatgcaacgtcaa
gctgtgccacttcttactgcttcagctccgatagtaggaacaggcatggaacaaattatt
gcacgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgagaaagtggat
aataaaagcattttcattttaggtgaagatgataaaggtccatttattgaccattatact
atggagaaaaatttaagaaccaatcaaaatacaaattatattcaacatcctattgttaaa
aaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatggatcaaggc
gaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggttataactat
gaggatgctatagttgtaagtgagagaattattcgtgaagatacctttacaagcgtgcac
atttatgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaaattaccaaa
gatatcccaaatgtaaaagaagaagatgttgcacatcttgatgagagcggtattgcaaaa
attggtactcatatcaaaccaggtatgattttggtgggtaaggtttctccaaaaggtgag
gttaaaccaactcctgaagaaagacttttaagagctatttttggagaaaaagcaggacat
gttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtggatgttaaa
attttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttatgataaagaa
aaaatggctttagaaaaagaacatcatgatagacttttgatgatggatagagaagaaatg
cttcgtgtttgcgctcttctttccaaagcccctttaaatagtgatcaaaaaattggagat
aaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatcaatcgtttt
actttaacaactttgattaaagcttattctaaagagattcaaaaagaatacgatgattta
aaaaatcatttccaaaatgagaagaaaaaattaaaagcagaacacgatgaaaagcttgaa
attttagaaaaagatgatattttaccaagtggggtaattaagcttgttaaagtttatatt
gctacaaagagaaagcttaaagtcggtgataaaatggcaggacgccacggaaacaaaggt
atagtttcaactatagttcctgaagtggatatgccttatttaccaaatggcaaaagcgtg
gatattgcgcttaatccacttggcgttccaagtcgtatgaatataggccaaattttagaa
agccatttgggtttaattggacttagactcggagatcagattcaagaaatttttgacaga
aagcaaaaagattttcttaaagaattaagagcaaaaatgcttgaaatttgttctattcca
agacttgcaagcgaaaaagaatttattaaaagcttaagcgatgaagagcttttaaactat
gctagagactggagtaaaggagttaaatttgctactcctgtttttgaaggtgtaaatata
gaagaatttagcaagctttttgaaatggccaagatagatatggacggcaaaacagaactt
tatgatggacgcacgggtgagaaaatcgcagagcgtgttcatgtgggatgtatgtatatg
ctaaaactccaccacttagttgatgagaaagttcatgcaagaagtacaggaccttacagc
ttagttacccaacaacctgtgggtggtaaagcactctttgggggacaaagatttggggag
atggaagtttgggcacttgaagcttatggagcggctcatactttaagagaaatgttaact
atcaaatcagatgatgtagaaggtagatttagtgcttataaagcattgacaaaaggtgaa
aatgttccagcaacaggaattcctgaaacattttttgtattaaccaatgagcttaaatct
cttgctttagatgttgagatttttgataaggatgaagataatgagtaa
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integrated database retrieval system
