Coturnix japonica (Japanese quail): 107306327
Help
Entry
107306327 CDS
T04297
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107306327 (YTHDC2)
Enzymes [BR:
cjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107306327 (YTHDC2)
Spliceosome [BR:
cjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107306327 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
HA2_N
nSTAND3
Ank_2
AAA_19
AAA_22
ATPase
Ank
Ank_4
AAA_7
AAA_16
AAA_23
PhoH
AAA_29
ABC_tran
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
107306327
NCBI-ProteinID:
XP_015704894
LinkDB
All DBs
Position
Z:complement(40636671..40671825)
Genome browser
AA seq
1437 aa
AA seq
DB search
MYSPGSTSPQQHDGAAWDGSASACFAASPSAASSFSSGRGRGKGLEAVRVSEEVEIAVNL
ALERFWYSDDQEMAFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKNESEVT
HAEMTCCLTTRTKQAVHSLIHRFPLTNKERIELLPKTRRGNAFAVETESKEVGKTSGRLS
SGIPQVPLKRGESEYDSFRQSLPVFEKKEEIVKIIKENKVVLIVGETGSGKTTQIPQFLL
DDCCKNGIPCRIFCTQPRRLAVIAVAERVAAERREKVGQTVGYQIRLESRVSPRTLLTFC
TNGILLRTLMARDSALSTVTHVIMDEVHERDRFSDFLLIKLRDIVQNQSNLKLIISSAAL
DVNLFVKYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEKQREEKQQSTL
TEWCSAQEDNSNPESQRRSVANVSEEYNVLESSGDAAFNNLIEKDTSCLEPWLIKEMDSC
LSDIWLHKDIDSFAQVFHFILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGAS
VHCKSSNGWMAIDWAKHFGQTEVVDLLESYSASVEFGNLDESSLVQAGGNDLGAEDRELL
KAYHHSLDDEKVDLDLIMHLLHNICSSSDGGSILVFLPGYDEIISLRNRIIFDDKRFVDN
AHRYQVFMLHSNMQTLDQKNVLKTPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEK
SFDALSCVTMLKTVWISKASALQRKGRAGRCRPGVCFRLFSRLRFQNMLEFQTPELRRMP
LQELCLHTKLLAPVNCAVVDFLMKAPDPPPAAIVNNAIQMLKKIDAMDAWEDLTELGYHL
AELPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPAVASQKRAAMVCRKRLAAG
TFSDHMVLLRAFQAWQKAQSDGWERAFCEKNFLSQATMEIIIGMRAQLLGQLRALGFVRA
RGGADIRDVNVNSENWAVVKAALVAGMYPNLVHVDRESLVLTGPKEKKVRLHPTSVLSQA
QYKKIPPSNGQAAAVQALPTDWLIYDEMTRAHRIANIRCCSAVTPVAVVLFSGPTRLPRS
ALQEPLSLRGNRVSNDDSDSGMEDERSNVALLKLDEWLHFKLDSEVAGLLMQLKLKWHSL
FLRRMRAPSKPWSQADEITLRAIISVLSTEEQSAGLLQPSGVGQRPRPVSYNELPSAPAW
RSGGSSAETELSDDSSNAEKVVRKSAPSSFHQSRRYKEKNNSKRTSDEKSDQSSVKSTDS
SCYPSPCASPSQVSGKVLFGSKTPSPRLSMPVRYFIMKSSNLQNLDISQQKGIWSTTPSN
EQKLNRAFQESNLVYLIFSVQGSGHFQGFAKMSSEIGCEQSQCWGSTGLGGVFKVEWIRK
ESIPFQFTQHLLNPWNDNKEVQISRDGQELEPQIGEQLLQLWDHSTSTGRTSTDSVK
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgtactctcccggcagcacctccccgcagcagcacgatggggccgcatgggacggctcc
gcgtctgcctgcttcgctgcttccccctccgccgcttcctccttctcgtcgggccgcggc
cgcggcaaggggttggaggctgtccgcgtctctgaggaagtggagatcgcggtgaacctg
gcgctggagcggttctggtacagcgatgatcaagagatggcgtttccttcgtctttcact
tctaccgaaagagcttttgttcaccgactgtgtcagtctctgggtttgatatctaaaagt
aaaggaaaaggagcaaatcgatatctaacagtcaggaaaaagaatgaatctgaagtaact
catgcagaaatgacttgttgtttgactaccagaacgaaacaggctgttcacagtttaatt
catagatttcctctcacaaataaagaacgaatagaacttctgccaaagacgcgtcgagga
aatgcatttgctgttgaaactgaaagcaaagaagttgggaagacaagtggaaggctcagc
agtggtattcctcaagtcccactgaaaagaggggagtcggaatatgactcttttaggcaa
tcattgccagtttttgaaaagaaggaggaaattgtcaaaataataaaggaaaataaagtt
gttctcattgtaggagagactggatcaggaaaaactactcaaattcctcagttccttctt
gatgactgctgcaaaaatggaattccctgtcgtatattttgcactcagccaagacgtttg
gcagttattgctgtggctgaaagagtggcagccgaaagaagagaaaaggttggccagaca
gttggttatcagatccgattagaaagcagggtttctccaaggacactgttaacgttttgc
actaatggcatactgcttcgcacactaatggcaagagacagtgctctatcaacagtaaca
cacgttattatggatgaagtacatgagagggatagattcagtgatttcttgttaataaaa
ctgcgagatatagtgcaaaaccagagtaatttaaaactaatcatttctagtgctgctcta
gatgtgaatctctttgttaagtattttggaagttgcccagtaatacacatccagggaaga
ccatttgaagttaaagagatgtttttggaggacattttacgaagcactggatatacaaac
aaagagatgataaaatacaaaaaagagaaacagcgagaagaaaaacagcaaagcactctc
actgagtggtgttctgctcaagaagataatagcaacccagagtcacagagaagatctgtt
gcaaatgtatctgaagagtataatgttctggagagcagtggggatgcagcatttaataat
ctgattgaaaaagatacaagttgtcttgaaccatggttaataaaagaaatggattcttgt
ctttctgacatctggttacataaagatatcgattcctttgctcaggtgttccatttcatc
ttaactgaaaatgtcagtgttgattataggcacagtgaaaccagtgcaactgcacttatg
atcgcttcagggagaggctttctaagtcaagtagagcaactgatcagtatgggagcaagt
gtccactgcaaatcatccaatggctggatggctatagactgggctaagcactttggacaa
acagaggtggttgacctgttggaatcttacagtgcttcagtggaatttggaaatctggat
gaaagttctctggtccaagcaggtggtaatgaccttggagcagaggacagagaattgttg
aaagcttatcatcacagtcttgatgatgagaaggtggatctggacctgattatgcactta
cttcacaacatttgcagtagttctgatgggggatcaattttagtatttcttcctggatat
gatgagataattagcttgaggaaccgtattatttttgatgacaagagatttgttgataat
gctcacagataccaagtattcatgcttcattcaaatatgcagactttggatcagaaaaac
gtgcttaaaactccaccttctggcatccgcaaaataattctttctactaatattgcggaa
accagtatcacagtcaatgatgttgtatttgttattgattcgggaaagatgaaagagaag
tcttttgatgcactgagttgtgttacaatgttaaaaactgtgtggatttcaaaagccagt
gctctgcagagaaaagggagagctgggcgctgtcgacctggagtctgcttccgtctcttc
agcaggctccgatttcagaatatgttggaatttcagactccagaacttcgaagaatgcca
cttcaggagctttgtttacacacaaaactactggctccagtaaattgcgcagttgttgac
tttctcatgaaagctcctgatcctccaccagctgcaattgtgaacaacgccatacagatg
ctcaagaaaatagatgccatggatgcctgggaagacctcaccgaacttggttatcatctt
gctgaattaccagtagagccacaccttggcaaaatggtgctgtgtgctgttgttctgaag
tgcctggatcctattctcactattgcttgcactcttgcatatcgagacccttttgtttta
cctgcggtggcctctcaaaagcgtgcagctatggtgtgcagaaaacgtttagctgcagga
acatttagtgaccatatggtgctcctcagggctttccaggcatggcagaaggcacaaagt
gatggctgggagagggccttctgtgaaaagaactttctttctcaagctacaatggaaatc
ataatcggaatgagagcacagttacttggtcagcttagagctttaggttttgtcagagcc
agaggaggtgctgatattagagatgttaacgttaactctgaaaactgggctgttgttaaa
gctgccttagtggctgggatgtatcccaatctagtgcatgtggacagggaaagcctggtt
ttgacaggaccgaaagagaagaaagtgcgattgcatcctacatctgttcttagccaggcc
cagtataaaaagatcccgccatcaaatgggcaagctgcagctgttcaggcactccctact
gactggcttatatatgatgaaatgacaagagctcacaggatagcaaatatcagatgttgt
tcagctgtaacacctgtcgctgtggtactcttctctggaccaactaggttaccacgtagt
gctttgcaagagcctttgtcccttcgaggaaatagggtatctaacgatgacagtgatagt
gggatggaggacgaaagatctaatgtggcactactgaagctagatgaatggctccatttc
aaactggactctgaagttgctggtttgctgatgcaactcaaactcaagtggcatagctta
tttttgcgacgtatgcgagctccttcgaaaccatggtctcaagctgacgaaataactcta
agagcaattatatctgttttaagtactgaagaacagtctgcaggtttgctgcagccttca
ggagttggtcagaggccaaggcctgtttcttacaacgaacttccttcagcacctgcctgg
aggtcaggcggcagctcagcagaaactgaattatctgatgattcctctaatgctgaaaaa
gttgtaaggaagtctgcaccttcatcatttcatcagtcaaggagatacaaagaaaaaaat
aattcaaaacgaacatcagatgagaagtcagatcagtcatcagtgaaatctacagacagc
agctgctatcctagcccgtgtgctagtccttctcaggtgtctggaaaggtattattcggt
tccaaaactccttcaccaaggctaagtatgccggttaggtactttataatgaagagcagc
aatctgcaaaaccttgatatttctcagcagaaaggtatatggtctactacgccaagtaat
gaacaaaaactaaacagagcttttcaggagagcaacttggtttacttaatattttctgtc
caaggatctggacactttcagggatttgctaaaatgtcttcagagatagggtgtgagcaa
agtcagtgctggggatctactggtttaggaggtgtgtttaaggtggaatggatccgaaaa
gaaagcattcctttccagtttacacaacatttgctcaacccctggaatgacaataaggaa
gtacagataagcagagatggccaggagctagagccgcaaattggagagcagttgctacag
ctctgggatcatagtacttcaacaggaagaacctcaactgacagtgtaaagtaa
DBGET
integrated database retrieval system
