Coturnix japonica (Japanese quail): 107306582
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Entry
107306582 CDS
T04297
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjo03036
]
107306582 (SHOC1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Meiosis-specific proteins
Others
107306582 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
107306582
NCBI-ProteinID:
XP_015705354
UniProt:
A0A8C2SP08
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Position
Z:58878631..58922269
Genome browser
AA seq
1450 aa
AA seq
DB search
MFPALKYHSTDYLYESMARQRYSICRLSLCFPPNLRQREKYHLTGLFVHDKYRRPWERIT
STQNMIAVSVLDQWKKSLTVEDFLEKKPISSVGFYVNIELIGSSNPNSPIDTETHYLLNK
VVCEEVSTQEKYLKTDCATELKEQWQGLHIGDEFVFVDDLENYRKKLPNLSTLLGRLKFF
CVRDPFLDSEGENLTEENIFRECLSFQNEIEMLESENKLQGIKEGFCKTTLEDREYFMLP
FELEFCKRRNSKSDSVKIPSYLGLKELLNLAPENMADENMCEEVIKEDLKEKIANKMEIA
KYCSTSVVSSSNSISMLEISESANHISYLKDEIEVPLTPPCKQQRSQVDFLCVGLQEELN
PLFDNSILITEPSKEYLDCLVWQSEKYWDNVSSLLLVDYWSFKLEYRHHSLTELRTMLSI
DVETPVIISLEKDWWLPMGLDVVCVETLEQLKGDSSNTNSLLSTEVEAFTKFSIYQLERW
PEEKNSVSDQELLSGERHQMDKVTDLCMPPQNKMQHFGLPINAASSLKIDRINTSLESAA
GGNAQKSKIEEPLYFLNQEEKTNISLGSVSCRDVPFKQHRFSEGQKLASFTLDSKWDNDD
SDLNNFIMLRCKQTITQSQGKNGVDSPGKVLQPEELHLPVHKEDSSVCEPARTEKKEQEN
DSSVIVKIQASESQCQAYCLLKEAATSALKDLRSLGVLASVSWSFDSIKFDHTRFFLKQQ
EKMICDHFKEGKVDEKEIMLFRHAALVHLLVTCRDLLLTCGLDTALGYLSKAKDIYKNIL
ESCLNNIWRQLKIVQYSSQKKHESSPKQTELRCRMLNWMQTYAEEHSVKILIIIRMDSER
EKAALIHTVSRVEGLKAIDLNSEKKENILGYKDIISNKYVCVIIHNQNIGADFPWRHFSL
VIEYDYFENSCWKRRCEDLNITYITYKTILPETVQMGNHYGSSLLEIQIPYVFLTTEGLL
SMPDFLQLLETRYSITFVERSSSYSLRLLGDTDRYVVLTIDECTAIFLQNMDELNHEESC
SNIILKLTALSLQYTRCWVVFCSRERLSLEYSLRGDTLLSLVLIYATLIEFTQKSEDFEV
KVVLTPGIEEAALLIRQIADNILMTSSSSPHEWLDKSWLSVLPSEMEKHLLTFPCINPLV
AQLMLRKESSLNRLFLASFDQLQEFLPEVPKKVLKHFSEITSSYSTNAAAPPKTTVKNVS
PPENWNTFKRLYPGYKQNSQSLESLPKAQTITGPSHVNSEATFLPLKHNQGFISSDLSSY
MHERPCFSEVAPERKQNFFVVPKGCEDFAHLNATNSFYVKGQAFRKHYISDHSSKTSEKD
FFATFSGCVPPDSSTAFLEEFRDTAFKSPGILTDETPWKDFSSTCTYNSFATSLIHSDSL
VDRDEIQILCSQNQGQEPSGKRKQSPPFLWAKGRKRTDLGFEEVPRNKKRRLMYERVPGR
ADGQTRLKFF
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagctctaaagtatcattcaacagactacttatatgagagcatggcaaggcag
aggtattccatctgtaggttatcactttgctttcctcccaatttacgacaacgtgaaaag
tatcatctgactggactttttgttcacgataaatataggaggccctgggaaagaattact
tcaacacagaacatgattgctgtttcagtgctggatcagtggaagaaaagtttaactgtg
gaggatttcctggaaaagaaacctatcagttctgtagggttctatgtcaatattgaatta
ataggaagttcaaatcccaactctccaattgacacagaaacgcattatttactcaacaaa
gttgtttgtgaggaagtatcaactcaagagaaatatttgaagactgactgtgccactgag
cttaaggaacagtggcaaggtctacacattggagatgaatttgtttttgttgatgatctg
gaaaactatcgtaaaaaacttcctaatttatctacacttctgggcagactaaaatttttt
tgtgtgagagatccttttctagattctgaaggagagaatttaacagaagagaacattttt
agggaatgtttgtcttttcaaaatgaaatagaaatgctggagagtgaaaacaaattgcaa
ggaattaaggagggcttttgtaaaaccacattagaagatagagagtatttcatgttgcct
tttgagttagaattctgcaaaagaagaaacagcaaatcagattccgttaagattccatca
tatttgggattgaaggagttactaaatttagctccagaaaatatggctgatgaaaatatg
tgtgaggaagtgatcaaagaagatctcaaagaaaaaattgcaaacaaaatggaaattgcc
aaatactgttctacttcagtggttagctccagtaacagcataagtatgttagaaatctct
gaatcagccaatcacatctcatacctgaaagatgaaatcgaagtacctttaactcctcca
tgcaaacaacaaagatcgcaagtggattttctctgtgtaggacttcaagaagaacttaat
cctctttttgacaacagtattttgattacagagccctctaaggaatacctggactgtttg
gtatggcaatcagaaaagtactgggataatgtgagctctcttttgcttgttgattattgg
agctttaaacttgaatatcgacaccattctctcacagaactgaggacgatgctttcaatt
gacgtagaaacaccagtgattatctctctggagaaggactggtggcttcctatgggatta
gatgtggtctgtgttgaaactttggagcaattaaagggagattccagtaatacaaacagt
ttgctttctacagaggtagaagcattcacaaaattttctatatatcagttagaaagatgg
cctgaagagaagaattccgtgtcagatcaggaattgctttccggtgaaagacatcagatg
gacaaagtaactgatctttgcatgccacctcagaacaagatgcagcactttggcctgcct
ataaatgctgcatcttctctcaaaatagacagaataaatacatctctggaaagtgctgca
ggaggaaatgcacagaagagtaagatagaagagccactttatttcttaaaccaagaagag
aagacaaacatatcacttgggtctgtcagctgtagagatgtgccttttaaacaacacagg
ttttctgagggccagaaactcgcatcattcacactggattcaaaatgggataatgatgat
tctgatctgaacaactttataatgctaaggtgtaaacagacgatcactcaaagtcaggga
aaaaatggtgtagatagtcctggaaaagtgctacagcctgaagaactacatttacctgtg
cacaaagaggacagttctgtttgtgagcctgcaagaacagagaaaaaagagcaagagaat
gacagcagtgtcatagtcaaaattcaagcatcagaaagccaatgccaggcatactgcctg
ctgaaggaagcagccacttctgctttaaaagacttgagaagtctgggtgtacttgcttct
gtaagttggagctttgacagcattaagtttgatcacacaagatttttcctaaagcaacag
gagaagatgatatgtgatcattttaaagaaggtaaagtagacgagaaagagatcatgctg
ttcagacatgctgctttggtgcatctgctggtgacatgtcgagaccttctgttaacatgt
ggcttggacacagcgctaggatatttgtctaaagcaaaggatatctataaaaacatctta
gaatcctgtttgaataatatctggaggcagttgaagattgtacagtacagcagccagaaa
aaacacgaatccagtcccaaacaaacagagcttcggtgtcgaatgttaaattggatgcaa
acttatgctgaggagcacagtgttaagatactaatcataataagaatggactctgaaaga
gaaaaagcggctctcattcacactgtatctagagtagaaggtttaaaagctattgatttg
aattctgagaaaaaagaaaacattctgggttataaagatatcatcagcaataagtatgtc
tgtgttattatacacaatcagaacattggagctgacttcccttggcgacacttctcatta
gttatagaatatgattattttgaaaactcttgctggaaaagacgatgtgaagatctaaat
attacttacattacttataaaaccatcctccctgaaacagtacaaatggggaatcactat
ggttcatctcttctggagattcagattccttatgtgtttctcaccactgaaggtcttctt
agtatgccagattttcttcagcttttggagactcgctacagcattacttttgttgaaaga
agcagcagttactctttaaggctacttggagatacagacagatatgttgtgttgacaata
gatgaatgcactgctatcttcttgcagaacatggatgaattaaatcatgaggagtcctgc
agtaatataatattgaagctgacagcattatcactccaatatacacgctgttgggttgtt
ttctgctccagagaaagactgagcttggagtacagtctcaggggagatacacttctcagc
cttgttttaatttatgccactttgatagaatttacacagaagtcggaagactttgaagtg
aaggtagttcttacaccagggattgaagaggcagcacttctaattcgtcagatagctgac
aacattttgatgacttctagttccagtcctcatgaatggctggataaatcttggctttct
gtcttgccctctgagatggagaaacacttgcttacttttccatgtatcaaccccctggtt
gctcagctgatgttaagaaaggaatcttctttgaacaggctttttcttgcaagctttgat
caactccaggaattcctaccagaggttccaaaaaaagtcttaaagcattttagtgaaatt
acctcttcatacagcacaaatgctgctgctccaccaaaaacaacagtgaaaaatgtatca
cctccagaaaactggaatacctttaaaagactctatccaggttataagcaaaattctcag
tctttagagtcgctacctaaggcacaaaccatcacagggccatctcatgtgaattctgaa
gccacgtttcttccattgaaacataatcaaggttttatcagctctgacctttcaagctat
atgcacgagagaccgtgtttttcagaagtagctccagagaggaaacagaatttctttgtt
gtaccaaagggctgtgaagattttgctcatctaaatgctacgaattctttttatgttaaa
ggtcaggctttcaggaaacactacatctctgatcattcctccaaaacttctgaaaaagat
ttctttgcaactttcagtggctgtgtacctcctgacagctctacggcttttctggaagaa
tttagagacacagcatttaaaagcccaggaattctgactgatgagactccatggaaagac
ttttcatccacttgcacatacaattcctttgcaactagcttaattcactctgattccctt
gttgatcgagatgaaattcaaattctgtgttctcaaaaccaaggtcaagaaccttcagga
aagagaaagcaaagtccaccattcttatgggcaaaaggaagaaaacgaacagatttggga
tttgaagaagtaccaaggaataaaaaaaggagactgatgtatgaaagagtccctggaaga
gctgatggacaaacacgtcttaaattcttttga
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