Coturnix japonica (Japanese quail): 107306964
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Entry
107306964 CDS
T04297
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo04510
Focal adhesion
cjo04512
ECM-receptor interaction
cjo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107306964 (COL2A1)
04518 Integrin signaling
107306964 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107306964 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjo00536
]
107306964 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cjo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107306964 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
107306964
NCBI-ProteinID:
XP_015705870
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MHGRRPPRSAAILLLLLLLTAAAAAQDRDLPEASGGCVQDGQIYSDKDVWKPEPCRICVC
DTGTVLCDEIICEEPRDCPNPEIPFGECCPVCSAEPPAAARKPGPKGQKGEPGDIKDVVG
PRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPAGPPGLSG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEPGEPGTAG
PMGPRGPPGPPGKPGDDGEAGKPGRPGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPAG
PQGAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAG
LAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG
PRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGETGPPGPAGFAG
PPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPPGPPGAAGKDGPKGVRGDAGPPGRAGDPGLQGPAGPPGEKG
APGDDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRG
PPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGERGETGPVGAPGAPGAPGAPG
PVGPTGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTG
LQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPG
PAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGEYWIDPNQGCNLDAIKVYCNM
ETGETCVYPTPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLSPNTASIQMTF
LRLMSTEATQNVTYHCKNSVAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDG
CTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgcacggccgccgcccgccccgctccgccgcgatcctcctcctcctcctcctcctcacg
gccgccgcagccgcgcaggaccgcgacctcccggaggcctccgggggctgcgtgcaggac
gggcagatttacagcgacaaagacgtttggaaaccggagccgtgccggatctgcgtgtgc
gatacgggaaccgttctgtgcgacgagatcatctgcgaggagcctcgggattgtcccaac
cccgaaatccccttcggagagtgctgccccgtctgctccgctgagccgcccgccgccgcc
cgaaaacctggccccaagggtcagaagggagaacccggagatattaaagatgttgtagga
ccccgagggcctccaggaccacagggcccggcaggagagcagggacagcgaggggaccgt
ggtgagaagggggagaagggtgctcctggtccccgtggaagggatggagaacccggcacc
cctgggaaccctggcccccctgggccccccggacctgctggcccccctggacttagtgga
aacttcgcggcacagatggcgggcggcttcgatgagaaggcgggtggagcacagatgggc
gtcatgcagggacccatgggccccatgggaccccgtggcccccctggccccactggtgca
cctggtcctcaaggatttcaaggcagccccggtgaacccggcgaacccggcactgctggc
ccaatgggtccccggggacctccaggaccacctgggaaacccggtgacgatggtgaagct
ggtaaacctggccgtcctggcgagcgtggcccccctggcccccagggcgctcgtggcttc
cctgggactcctggtctccctggagtgaaaggacacagaggctaccccggtttggacggt
gccaaaggagaggcgggggcacctggagccaagggtgaatctggttcaccgggtgagaac
ggctcccccggccccatgggaccccgtgggctgcctggagagcgaggacgtcccggcccc
tctggtgctgcgggtgctcgtggcaatgatggtctccccggccctgctggaccccctgga
cccgtcggccctgctggagcccccggcttccccggagcccccggttcaaagggtgaagct
ggccccactggcgcaaggggtcctgagggtgcccaaggaccccgcggcgaatctggtacc
cccggctctcccggccctgctggtgcacccggcaacccagggactgatggcatccccggt
gccaagggctcagcgggtgccccaggcattgcaggagctccaggattccccggcccacga
ggcccccccggaccccaaggtgccaccggaccactgggacccaaaggacagatgggcgaa
cccggcatcgcaggcttcaagggtgagcagggaccgaagggtgagacgggccccgcagga
ccccaaggtgcccctgggccggctggtgaggaaggcaagagaggagctcgtggtgaacct
ggtgctgctggccctgtgggcccccctggagagaggggtgctcctggcaatcgtggattc
cccgggcaggacgggctggctggacccaagggtgctccaggtgaacgtggccccgctggt
ctcgctggtcccaaaggtgccaccggtgaccccggacgtcctggagagcccgggctgcct
ggagcaaggggtctcaccggtcgccccggtgatgcgggacctcaaggcaaagtcggtcca
actggtgctcctggagaggatggccgccccggcccccccggccctcagggtgctcgtggg
cagcccggtgtgatgggtttcccaggtcctaaaggtgctaatggtgagcctggaaaagcc
ggagagaaaggactgcctggtgccccagggctgcggggtcttcctggcaaggatggggaa
acaggagctgctggcccccctggacccgccggtcctgtgggtgagagaggagagcaagga
gcccccggtccttctggcttccagggactgcctggaccaccaggtccccctggggagggc
ggcaaacccggagaccagggtattcccggagaagctggtgcccccggtcttgttggtccc
agaggcgaacgtggattccctggtgaacgtggctctcctggtgcccaagggctgcaaggt
ccccgtgggctgcctggaacacccggcactgacggacccaagggtgcaaccggtccagct
ggtcccaatggcgcccaaggtcctccagggctgcagggaatgcctggtgagagaggagca
gctggtattgctggccccaagggtgaccggggagatgttggggagaaaggacccgaggga
gctccaggcaaggacggcgcacgtggtctgacgggtcccattggtccccctggtcccgct
ggtcccaacggtgagaagggtgaatctggccctcctggtccatctggtgctgccggtgcc
cgtggtgcccctggtgagcgtggtgagactggtcctcctggtcctgctggatttgctggt
cccccaggcgccgatggacaacccggtgccaaaggcgagcagggagagcccgggcagaag
ggtgatgctggcgctcctggtccccaaggtccctctggtgctcctggaccccagggtcca
actggtgtcactggtcccaaaggagctcgcggagctcagggtccccctggagccacagga
tttcctggagctgctggacgtgtgggaccacctggccctaatggtaacccaggccccccc
ggacctcctggcgctgctggcaaagatggccccaagggtgttcgtggtgatgctggcccc
cctggccgtgctggtgaccctggcctccaaggccctgctggcccccctggcgagaagggt
gcacccggcgatgacggccccgcgggtcccgacggcccccccggccctcaaggtttggca
ggacaacgtggtatcgtgggtctcccaggacagcgtggtgagagaggcttccctgggctg
ccaggtccatcgggagaacctggcaagcaaggagcacctggctctgcaggtgaccgaggt
ccccctggccctgtgggcccccctgggctgacaggtcccgctggagaacccgggcgtgag
ggcagccccggtgctgatggacccccgggcagggatggtgcagctggtgtgaagggtgaa
cgtggtgagaccggacctgtgggtgcccccggtgctcctggagcccccggcgctcccggc
cctgttggtcccactggaaaacaaggagacagaggcgaggcgggtgcacaggggcccatg
ggtccctctggtcctgctggagctcgaggaatgccgggtccccaagggcctcgtggtgac
aaaggtgaaacaggagaggctggagagagaggactgaagggccaccgcggcttcaccggt
ctgcagggtctgcccggaccacccggtccttctggagatcaaggtgctgctggtcccgct
ggtccctccggtcccagaggtccccccggtcctgttggcccctctggcaaagatggctcc
aatggcatgcctggccccattggtcctcccggtccccgcggacggagtggtgaacccggc
cctgcgggtccccctggaaaccccggtcctcccggtcctcccggccccccaggcactggc
atcgacatgtctgcttttgctggtctgggtcaaacagagaagggtcctgaccccatccgc
tacatgagggcagatgaggcggccggagggctgcggcagcacgacgtggaggtggacgcc
acactcaaatccctcaacaaccagattgagagcatccgcagccctgagggttccaagaag
aacccggccaggacctgccgtgacatcaagctgtgccatcccgaatggaagagcggcgag
tactggatcgaccccaaccaaggctgcaacctggatgccatcaaggtctactgcaacatg
gagacaggcgagacatgcgtctacccaacccccagcagcatccccaagaagaactggtgg
accagcaagacaaaagacaagaagcacgtctggtttgcagagaccatcaatggtggtttc
cactttagctacggcgatgagaacctgtcccccaacactgccagcatccagatgaccttc
ctgcgcctgatgtccaccgaggccactcagaacgtcacctaccactgcaagaacagcgtc
gcctacatggacgaggagacgggcaacctgaagaaagccatcctcatccagggatccaac
gacgtggagatcagagctgagggcaacagcaggttcacctacagcgtcttggaggacggc
tgcacgaaacacactggcaaatggggcaagacggtcatcgagtaccggtcgcagaagacc
tcgcgcctgcccattgtagatattgcacctatggacattggcggagccgatcaggagttt
ggcgtggatattggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
