Coturnix japonica (Japanese quail): 107307844
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Entry
107307844 CDS
T04297
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03013
Nucleocytoplasmic transport
cjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107307844 (UPF3A)
03015 mRNA surveillance pathway
107307844 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107307844 (UPF3A)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107307844 (UPF3A)
mRNA cycle factors
P-body specific factors
107307844 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
107307844
NCBI-ProteinID:
XP_032297873
LinkDB
All DBs
Position
1:complement(123379800..123399020)
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AA seq
432 aa
AA seq
DB search
MEDNSLLSMQVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFR
NPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDTKAGSIEDDPEYRK
FLESYCADEEKICANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREER
RRRELEKKRLREEEKRKRREEERRKRKEAEKHKKISDKEIRIKLLKKPEKGDEPASEKHK
EKDEEADTEENKWDKSPGPGSIRSKSLEGSLKELKEKSQNDSDKEQRDLERRFRDKEPER
QRYRLDDGRKHRTHYEFDKFVRRNEEELKWGKGYNQDRGKKGNHNYSFTVEAVDKLGKED
KCDDMASKKERIRNKDRPAMQLYQPGARIRTHTGSMSKGYDCSGKSLEDALDKKYEVDSS
MGGGSEKSEEAE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggaggataattctcttttgtctatgcaggtggttattcgacggcttcctccttgtcta
accaaggagcagctggaggagcagctacatcctctccctgctcatgattattttgagttt
tgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaactttaga
aatcctgaggacatcctcctttttagagatcgctttgatggctatgtcttcattgataat
aaaggtttggagtaccctgcagtggttgaatttgctccatttcagaagatttcaaaaaag
aaattaaaaaagaaagacaccaaggctgggagcattgaagatgacccagaatataggaaa
tttttagaaagttactgtgctgatgaagagaaaatctgtgccaatcctgagactcttttg
ggagagattgaggccaaaacaagggaactcattgctagaagaacaacaccccttttggaa
tatattaaaaatagaaaattagaaaagcagagaattcgagaagagaaaagggaggaacga
aggcggagggaactggagaagaaacgtctgagagaagaagagaaaaggaaacgcagagag
gaggagagacgtaaaaggaaagaagcagaaaaacataagaaaatttctgataaagaaata
aggatcaagcttcttaagaagcctgaaaaaggagatgagccagccagcgagaagcacaaa
gaaaaagacgaagaagctgacactgaagaaaacaaatgggataagtctcctggacctggg
agtataagatccaaatcattggaaggttcactaaaagagcttaaggagaagtcacaaaat
gatagtgacaaagagcaaagagatttggagagaagatttcgagacaaagaacctgaaagg
caaaggtatcgactggatgatggcaggaagcatagaactcactatgagtttgacaagttt
gtgagaaggaatgaagaagagctgaaatgggggaaaggatacaaccaagacagaggaaag
aaagggaaccacaactacagcttcactgtggaggcagtagacaaactgggtaaagaggac
aagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgcccagccatg
cagctgtaccaaccaggggctcgcatccgaacgcatacgggatccatgagtaaaggctat
gactgcagtgggaagtctttggaagatgctcttgacaaaaagtatgaggtggatagctca
atgggaggcggctctgagaagagcgaggaagcagaataa
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