Coturnix japonica (Japanese quail): 107308252
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Entry
107308252 CDS
T04297
Symbol
HMGB1
Name
(RefSeq) LOW QUALITY PROTEIN: high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03410
Base excision repair
cjo04140
Autophagy - animal
cjo04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107308252 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107308252 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
107308252 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjo03036
]
107308252 (HMGB1)
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107308252 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjo04147
]
107308252 (HMGB1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
107308252 (HMGB1)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107308252 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
107308252 (HMGB1)
Exosome [BR:
cjo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
107308252 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Cwf_Cwc_15
Astro_capsid_p
Motif
Other DBs
NCBI-GeneID:
107308252
NCBI-ProteinID:
XP_015707497
LinkDB
All DBs
Position
1:156669258..156677540
Genome browser
AA seq
252 aa
AA seq
DB search
MGKGDPKKPKGKMSAYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDIAAYRAKGKVDAGKKVVAKAEK
RKMKXEEEDDEDDEDDEEDEEEDDDDDEEDXEDEEDDGGRKMRKMMKKRKMRRRKMMMMM
NKSLLEQFLSCL
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggtgatcctaagaagcccaagggcaagatgtctgcctacgccttctttgtg
cagacgtgccgtgaggagcacaagaagaaacatccagatgcttcagtgaacttctcagag
ttctcaaaaaaatgctcagaacgatggaagactatgtcttctaaggagaaagggaagttt
gaggatatggcaaaggcggacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcaccgaagaggcctccttcg
gcttttttcttgttttgctctgagtttcgtcccaaaatcaaaggagaacatcctgggctg
tccattggggacgtagcaaagaagcttggtgagatgtggaacaacctcagcgatggtgaa
aagcagccttataacaataaggctgctaagctgaaggagaagtatgagaaggatattgct
gcataccgggccaaagggaaggttgatgcgggcaaaaaagtagttgccaaggctgagaag
aggaagatgaagnatgaagaggaagatgatgaagatgatgaagatgatgaagaagatgag
gaggaagatgatgatgatgatgaagaagactnggaagatgaggaagatgatggtgggagg
aagatgaggaagatgatgaagaagaggaagatgaggaggaggaagatgatgatgatgatg
aataagtctcttttagagcaatttctttcttgtctataa
DBGET
integrated database retrieval system
