Coturnix japonica (Japanese quail): 107308471
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Entry
107308471 CDS
T04297
Symbol
PCF11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107308471 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjo03021
]
107308471 (PCF11)
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107308471 (PCF11)
Transcription machinery [BR:
cjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107308471 (PCF11)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107308471 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
Pcf11_helical
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
107308471
NCBI-ProteinID:
XP_015707868
LinkDB
All DBs
Position
1:169121415..169144360
Genome browser
AA seq
1637 aa
AA seq
DB search
MSAPESSAGSSEAREDTCRDYQSLLEDLTFNSKPHINMLTILAKENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKKVGREYLTAFTKNLVATFICVFEKVDANTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPLNVNTSSIHVNPKFLNKSPEESTASTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIPSVPAPSKPHVSQTPHMAVKTPTQASLQSEKIKPSPSPPLHDVKIVNRDPRLNRM
SQHSSHAKDQSHRKEFPPSASGQSDTKASKTSQSEKQSSTKPEKMKAGEKPQKKEPDQLE
TKSKSPSPLKNKLPNTKDTKTQESESTKVSEMSKRDPRLKKHLQEKPESKGDEVKEKRRN
TEKKXKDEHKTSEHRPVGSRNKTINGVVQKQDVTTEESEKQGGKQGRSSNRKRSRSPSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKICQIGAEQSHAEEASQGARDERNSK
SENVNKRVRDPREGEKKPRRQAPRKQQASISTKGSPDPKENAENWQGSKAGKEWKPGWEE
NKNSQQTEEHQAVGKSPHQQHRENWPAAKGILSPRAPKQQXHRLSVDANLQIPKELTSAS
KRELLKKANDRLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTDEKGSLKRKPL
LSDAELTYYEHKTKLKRTQVQHSLSRLDLLDPDDILDYHVPDALLSVDCEQAKAKCGVQF
ERKEPFGERSRRHSPVSGTSRPFADNLSPLEGRQRLEEQNATKGGRGSKNFDPYDNWGES
DEFRDALRQQGKGTTEFQKIDGDAVCRFDNREERQLLGKSGVRDEPRSPFNERFKRARYE
DPDKEPFPDSPGSRFGGIEAKPRISALMEDRPLFDGSSRPSAARVGADGQGSPFIDSPTA
GSSSRIDGPTGQAALRFEGPLVGAGASQFDGPLAGAGGAGSLRFDGPPGQLAGALRFEGP
HGQVGGGGPLRLEGPLGPLRFEGPAGQPVGGPRFKGPGVGLRFEGPRGQPSGGLRFEGPH
GQPLGPHGQGGLRFEGPHLQPLGPHGQPGSGLRFEGPHGQPGVGPRLIDGPVHQGVGGLR
FDGPMGRTGPRFDGCHAGFDGQPGQLSLLQRFYGIHGQPGPRFERAPGQPAQPRFDAAIP
QRFDGPHQPASRFDLPLGLHGSRFEIASHPASRLEMSPYGQSGPFVDPPGQGYSGPAHGM
QFQRPEMFDSSLGPNFSGPAGPGAQNFALRASGHYFDDKLQGSQYGNFNNMSMGGHQVSH
MSAQTGPYGQGQQYLPNPGSFVQNPAGGAVPHSYPDNHVGQLDVNELFAKLLSTGILKLS
KTDSTSAQANETSAQPAAEEEDDDQGDHDVPDLTNFKVEELSQRYDSVINRLYTGIQCCS
CGMRFTTSKTDVYADHLDWHYRQNRSKKDVRRKITHRRWYYSVTDWIEFEEIADLEERAK
SQFFEKAAKEKQFQSVPAGPAGAVERCEICREQFEQYWDEEEEEWHLKNAIRMHEKIFHP
SCYEDYQNTSSSDCTPSPSKTPVENPLHIMLNIVKQETDESCDSPQVKEEPDGTPAACAE
ESTPASIDVKTEPDESV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacacgtgccgcgat
taccagtcattgttggaggacctgacgttcaacagcaaacctcacatcaacatgctgacc
atcctggccaaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcgtcagagaagcttcctgttatgtaccttatggattccattgtc
aagaaagttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgcaaatactaggaaaagtttatttaaattacgctccaca
tgggacgatatttttcctttgaagaaactgtatgcacttgacgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccctaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcatctacctctgctgtcact
tctggtgcctctactcctccagctgttccagaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcgaagcaaaaacagttgttagaacttcagcaaaaaaag
ttagagctggagttggaacagactaaagcacagttggctgtttctcttagtgttcagcaa
ggatcatcttctataccttcagttccagcgccttccaagccacatgtgtcccagacacct
cacatggccgttaagacgcctactcaggcttcgttacagtctgagaagatcaaaccatcc
ccaagtcctccacttcacgatgtcaaaatagtaaatagagatcctcgacttaatagaatg
tcacaacattcttctcatgctaaagatcagtcccataggaaagaatttccaccaagcgca
tctggtcagtctgataccaaggcgagcaaaacatcccagtctgaaaaacaaagctcaaca
aagccagagaaaatgaaagcaggtgaaaaaccacaaaagaaagaacctgatcagttggaa
acgaagtctaaatctccatctcctttgaaaaacaagcttccaaatactaaagatactaaa
acccaagaatctgaaagcacaaaagtatctgaaatgagtaaacgggatccaagactgaaa
aaacatcttcaagaaaagccagagagcaaaggggatgaggtgaaagaaaagaggagaaat
acagagaaaaaangaaaagatgagcataagacatctgagcatagaccagtaggcagcagg
aataaaacaattaatggtgttgtccagaaacaagacgtgactacagaagaatcagaaaaa
cagggtggaaaacaagggagatccagtaatagaaaacggtcacgatccccgtctcctaag
tcacggtcaccatctacacattctccaaaacgaagagagaggagatcacccaaaagaaga
ctcaggagtttatctcccacttcttcaactcctaaaattggaaagatatgccagattggc
gctgaacagtctcatgctgaagaagcctcacaaggggcaagagatgaaagaaattctaaa
agcgaaaatgtaaacaagagggtgcgagatccaagggagggtgaaaaaaagccaagaaga
caggccccaagaaaacagcaagccagcatttctacaaaaggttctcctgatccaaaggag
aatgcagagaattggcagggatccaaagcaggcaaagagtggaaacccggttgggaggaa
aataaaaactctcagcagactgaagaacaccaagcagttggtaaatcccctcaccaacaa
caccgagaaaactggcctgctgctaaaggaattctgtcaccccgagcaccgaaacagcaa
nnacaccggttaagtgtggatgccaatttgcaaattcccaaagaactgacgtctgcaagc
aagagagaattacttaaaaaggccaatgaccgcttagcatctggtgaaataacacaagac
gagttccttgtggtagctcatcagattcgacagctgttccagtaccaggaaggaaagcac
agatgtaatgtgtgggatagccctacagatgaaaaaggctctttgaaaaggaagcctctt
ctgtcggatgcggagttaacatactatgagcataaaactaaactgaagaggacacaagtt
cagcattcattgtcaagacttgatctcttggatcctgatgatattttggattatcatgta
cctgatgcattgctctctgtggactgtgagcaagcgaaagcaaagtgtggagtgcagttt
gaaagaaaagaaccctttggagaaagatcaagacggcactctcctgtaagtggcaccagc
agaccctttgctgataacctttcacctctggagggtcgacaaaggcttgaggaacaaaat
gctactaaaggaggaagaggttcaaaaaacttcgacccttacgacaactggggagaatca
gatgaattcagagatgctctcagacagcagggaaaaggtacaacagagttccagaagatc
gatggtgatgcagtctgtaggtttgataaccgtgaagaaagacagctgcttgggaaatct
ggtgttcgagatgaaccaagatcaccattcaatgaacgtttcaaaagagctagatacgaa
gatccagataaagaaccatttcctgacagtccagggtcaagatttggaggcatagaagca
aagccgagaataagtgcactaatggaagacagacctttatttgatggctcatctagacca
tctgctgcaagagttggggcagatggacaaggaagtccttttatcgatagccctactgct
ggttcaagttctagaattgatggaccgactggacaagctgctctgagatttgagggccct
ttggtgggggcaggtgcttctcagtttgatgggcccctggcaggagcagggggagctgga
tccctaagatttgatgggccaccagggcagctggcaggggctctcaggtttgaaggacct
cacggacaggttggtgggggaggtcctttgaggcttgagggacctcttggaccattgcgg
tttgaggggcctgcaggccagcctgttggtggtcctagattcaaaggacctggagttggt
ctcaggtttgagggaccccgtggtcagccttcaggtggtctcaggtttgagggacctcat
ggtcaacctctggggcctcatggtcaaggtggtctcaggtttgagggtccgcatttacag
ccattggggccccatggtcaacctggaagcggcctcagatttgaggggccacatgggcag
ccaggtgtagggcccaggttgattgatggaccagtgcaccagggcgttggtggacttaga
tttgatggtcctatgggacggaccggtccgagatttgatggctgtcatgctggctttgat
ggtcaacctggacaactgtctcttttgcaaagattttatggaattcatggacagcccggc
ccaagatttgaaagggctcctggccagcccgcacagccacgatttgatgcagccatacct
caaagatttgatggccctcaccagcctgcctcaagatttgacctgccccttggccttcat
ggttcacgttttgaaatagctagccatcctgcctcacgattagagatgtcgccatatgga
caaagtggtccgtttgttgacccacccggacagggctacagcggaccagctcatggaatg
cagttccaaaggcctgaaatgtttgacagttcactaggaccaaatttcagtgggccagct
ggcccaggagcacagaattttgcattgagagcatccggacattactttgacgacaaactt
caaggttcacaatacggaaacttcaataatatgtcaatgggaggtcatcaggtttcgcac
atgtctgctcagacaggaccttatggccaaggtcaacagtatctaccaaatcctggaagc
tttgttcagaaccctgcaggaggagcagttccacattcatatcctgataaccacgttggt
cagctcgatgtcaacgaattgtttgctaaactgttgtcgacaggaatcctcaaactgtca
aaaacggattccacttcagcacaagcgaatgaaacatcggcgcagccagctgctgaagag
gaggatgatgaccagggtgatcacgatgtcccagacctcacgaactttaaagttgaagaa
ctcagtcagcgttatgatagtgttataaatcgactatacactggaattcagtgctgctcg
tgtggaatgagatttactacttcaaagacagacgtttatgcagaccatttagattggcac
tatcgccagaaccgttcgaaaaaagacgttcgccgaaaaattacacacagaaggtggtac
tacagcgtaacggattggattgagtttgaagaaatagccgacctagaggagcgtgcaaaa
agccagttctttgaaaaagctgcaaaagaaaagcagtttcagagtgtgcctgctggacca
gctggagcagttgagaggtgtgaaatctgccgggagcagtttgagcagtactgggatgag
gaagaggaagagtggcatctaaagaatgctatcagaatgcatgagaagattttccatcca
tcctgctatgaagattaccaaaacacatcatcatctgattgcacaccctctcccagcaag
acccctgtagaaaatcccctacatattatgttgaacattgttaaacaggaaacggatgag
tcctgtgactcacctcaagtgaaagaagaacctgatggcacccctgctgcctgtgcagaa
gagagcacacctgcctctatagatgttaaaacagaaccagatgagtctgtttag
DBGET
integrated database retrieval system
