Coturnix japonica (Japanese quail): 107308672
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Entry
107308672 CDS
T04297
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107308672 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjo03021
]
107308672 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cjo03036
]
107308672 (SMARCC1)
Transcription machinery [BR:
cjo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107308672 (SMARCC1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107308672 (SMARCC1)
PBAF complex
107308672 (SMARCC1)
GBAF(ncBAF) complex
107308672 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
107308672
NCBI-ProteinID:
XP_015708200
LinkDB
All DBs
Position
2:699832..747113
Genome browser
AA seq
1136 aa
AA seq
DB search
MAAAVAAGGGSGTGAATAAAVGVGGGGPGLGALSVARRKDGGPTGKFWESPETVSQLDSV
RVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHITNPAFTKLPAKCFMDFKAG
GTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPTIYLIPD
IELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMDDDEWLRPVMKKDKQVLVHWGF
FPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDIFNEWMNEEDYEVDENRKSVS
FRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKSGKKGQATIYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETV
ATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLIN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQIPAAQQMLSFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKMDGA
EEEKMETETDGQQPEKVNSAQRVAMKGHFDTHQPKLLHSEMPHEKGRTVQVESKAESETE
EGDKVQEGENERNPEKEQESEATADTKSEEKEAEENKENVDASKDKEMEAGKKKVEHEIS
EGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD
REKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQNAQQPHQHSGPGLNPLGT
AAHQGILPHQQPPPYPMMHHQMPPPHPPQPGQMPGPGSLLPTQPIPGRMLPGVSANLHPA
GAAAPPGMAPMAGGLIGPRVPLAAPNGMYPPAAQPPPPAEGVTPPPAGAPPAAAAP
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgtggcggcgggcggggggagcgggaccggggcggccacggcggcggct
gtgggggtcggcgggggaggcccggggctgggagcgctgtcggtggcgaggcggaaggac
ggcggcccgacagggaagttctgggagagccccgagacggtgtcccagctcgactcggtc
cgcgtgtggctcgggaagcactacaagaagtatgtgcaagcagatgctcctaccaacaaa
acgctggctgggctggtggtgcagctgctgcagttccaggaagatgcctttgggaaacac
atcaccaatcctgccttcaccaagctcccggcaaagtgcttcatggatttcaaagctgga
ggtacattatgtcacattcttggtgctgcttacaaatataagaatgagcagggctggcgg
aggtttgacctgcagaacccatcccggatggaccgaaatgtggagatgttcatgaacatt
gagaaaacactagtgcagaacaactgtctgagcagaccaaccatctacctcattccagat
atagagctgaagctggctaataaactgaaggacattgtcaaacgtcaccagggaacagta
actgaggagaaatccaaggccacccaccacgtgtatccaagtcctacctcaatggatgat
gatgaatggttgagacccgtgatgaaaaaagacaagcaggtgctggtgcactggggcttc
tttccagacagctacgacacttgggttcatgccaatgaaatagatgctgaaattgaggat
cctccgattcctgaaaagccgtggaaggttcatgccaagtggattttggacacagatata
ttcaacgaatggatgaatgaagaggattatgaggtggatgagaacaggaaatctgtgagt
tttcggcagagaatctccatgaagaatgaagagcctgtgcgcagtcctgagaggagggac
aggaaagcagcagccagcacacggaagaggaagcattctccttctccaccccccactcct
gtggagtcaagaaaaaaatcagggaagaaaggacaagcaaccatatacgggaaaaggagg
gggcagaaggaggaagatgagcaagaagatcttacgaaggacatggaggatcccacaccg
gtccctaacatagaagaagtggtgcttcccaaaaatgtgaacccaaagaaagacagtgag
aacacgcctgtgaaaggaggaacagtggcagaccttgatgaacaggatgaggagacagtg
gcgactggaggaaaggaggatgaagatcctaataaaggtgaccagagtcgatcgatcgat
ccaggagaagacaatgtcacagaacaaaccaaccacatcatcattcccagctacgcatct
tggtttgactacaactgcattcatgtgattgagcgccgtgcccttccggagttcttcaat
ggaaaaaacaagtccaagactcctgaaatatacctggcttaccgcaacttcatgatcgac
acctatcgcctgaacccgcaggagtacctgaccagcaccgcctgcaggaggaacctgacg
ggagatgtgtgtgctgtcatgagagtgcacgcttttctggagcagtggggtctcatcaac
taccaggtggacccggagagccgccccatggccatgggccctcctcccacccctcacttc
aacgtgctggccgatacaccctccggcctcatgcctctgcacatccgtaccccacagatc
ccagctgctcagcagatgctgagttttcctgagaagaacaaagagaaacccactgacctg
cagaactttgggctgcgcacagatatttactcaaaaaagaccttagcaaagagtaaaggt
gccagtgctggaagagaatggacggagcaggagacgctgctgctgttagaagccttggag
atgtacaaggacgactggaacaaggtctcagagcacgttggcagccgcacccaggatgag
tgtatcctccatttcctgcggctccccattgaggatccctacctggagaactcggatgcg
tccctcggccccctggcctaccagcctgtgcccttcagccagtctggcaaccccgtgatg
agcactgttgctttcctggcatcggtggtggacccccgtgtggcatcggcagcagcaaag
gctgccttagaggagttctcccgtgtcagagaggaggtgcccctggagctggtggaagcc
cacgtgaagaaagtgcaggaagcagcacgtgcctcggggaaggtggatcccacctacggg
ctggagagcagctgcattgctgggacggggccggacgagccagaaaagatggatggagcc
gaagaagaaaaaatggaaacagagacagatgggcagcagcctgagaaggtaaattcagct
cagcgtgtggccatgaaggggcacttcgacactcaccaacccaaactactgcattctgaa
atgccccatgagaagggtaggactgtgcaggttgaaagcaaagcagagagtgaaactgag
gaaggtgataaagtacaagaaggagaaaatgagaggaatccggaaaaggaacaagaaagt
gaagcgactgcagacaccaaatcagaagaaaaggaggcagaagagaacaaggagaatgtt
gatgcaagcaaagacaaagaaatggaggctgggaagaagaaagtggaacacgagatctcg
gaaggaaacgtagctacagctgcagctgctgctctcgcctcagctgccaccaaagcaaag
cacctggcagcagtggaagaaaggaaaatcaagtccctggttgctctcctggtggaaacg
cagatgaagaagctggagattaaacttcgccatttcgaggagctggaaaccattatggac
cgggagaaagaggcattggagcagcagcggcagcagctgctgacggagcgtcagaacttc
cacatggagcagctgaaatacgctgagctccgcgcccggcagcaaatggagcagcagcac
agccagaacgctcagcagccacaccagcactcggggcccgggctgaacccgctgggcaca
gcagctcaccagggcatcctgccccaccagcagcccccgccgtaccccatgatgcaccac
cagatgcctccaccccaccccccacagccaggtcagatgcccggtcccggctccttgctg
cccacgcagcccatcccgggccggatgctgccaggagtgtcggccaaccttcaccccgcg
ggcgctgctgctccccctggcatggcacccatggctgggggcctcatcgggccccgcgtc
cccctggcagcccccaatggcatgtaccccccagctgcgcagccgcctccacccgccgaa
ggggtgaccccccctcccgcaggagcccccccggccgcggccgccccataa
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integrated database retrieval system
