KEGG   Coturnix japonica (Japanese quail): 107309854
Entry
107309854         CDS       T04297                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo04140  Autophagy - animal
cjo04148  Efferocytosis
cjo05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    107309854 (VPS41)
   04148 Efferocytosis
    107309854 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    107309854 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cjo04131]
    107309854 (VPS41)
Membrane trafficking [BR:cjo04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    107309854 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz WD40_Prp19 zf_RING_Vps8_fungal Beta-prop_EML_2 Beta-prop_HPS5 zf_RING_Vps8 Vps39_1 ANAPC4_WD40 TPR_PEP5_VPS11 WD40_WDHD1_1st zf-RING_5 Frtz Beta-prop_RIG_2nd Beta-prop_IFT140_2nd zf-RING_11 zf-RING_2 zf-rbx1
Other DBs
NCBI-GeneID: 107309854
NCBI-ProteinID: XP_015710478
UniProt: A0A8C2T475
LinkDB
Position
2:77199953..77298142
AA seq 854 aa
MAEAAEKETRSNEESTDESEEDESEEEPKLKYERLSNGVTEILQKDAASCMTVHEKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSAEEFH
ETFDCPIKIVAVHPHFVRSHFKQFVTGGKKLLLYERGWMNRWKPSVLHEGEGNIRNVKWR
GHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKI
CSVKERHASEMRDLPNRYVEIVFQFDTEFYISGLAPLCDQLVILSYVKEISEKTEVECCA
RPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKTIKKHKILDIGLAYINHLVEKGEHDLAARKCQK
ILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPVLKPLIYEMVLHEFLESDYEGFATLI
KEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLRTLAELYTYDQRYGRALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIDRVVEELENRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPSDASKSFNVVVFHCRHMFHKECLPVSNTVSSVQFCNICSA
KHRGPGSAILEMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcggaagctgcggagaaggaaaccaggtctaatgaggaatcaacagatgaatctgag
gaagatgagagtgaagaggaacccaagctgaagtacgaacgactttctaacggagtgaca
gaaattctgcagaaagatgcagccagttgcatgacagtgcatgaaaagtttttggcactg
ggaacacattatggcaaagtttatttacttgatgtccaggggaacatcacacagaagttt
gatgttagccccgtgaagataaatcagatcagtctggatgaaagtggagaacacatgggt
gtttgttcagaagatgggaaggtgcaagtgtttggattgtattcagcggaagaatttcat
gaaacatttgactgtcctattaaaattgttgctgttcatcctcattttgtaagatcccac
ttcaagcagtttgtaacaggaggaaaaaagttactgctatatgagagaggctggatgaat
agatggaagccttccgttttacatgaaggggaaggaaacataagaaatgtaaaatggaga
ggacacttaattgcttgggccaataacatgggtgtgaagatacttgacatgatctccaag
caaagaattaccaatgtgcctcgagatgacataagccttcgcccagacatgtatccctgt
agcctttgctggaaggataatttaacactgattattggctggggaaattcagtaaagatt
tgctcagtgaaggagcggcatgccagtgaaatgcgtgaccttccaaaccgctatgttgaa
atagttttccagtttgatacagagttctatatcagtgggctcgcacctctctgtgaccag
cttgttatactttcatacgtaaaggagatttcagaaaagacggaggtggagtgttgtgcc
aggcccagactggacatcgtacaacccctgcctgagtcttgtgaggagatctcttctgat
gcactgacagtacgaggatttcaggagaatgaatgtagagattaccatttagagtattcg
gaaggcgaatcgctgttttatatcattagcccaagagacgtggttgtagctaaagaacgg
gaccaagatgaccacattgactggcttcttgaaaagaagaaatatgaagaggctttgatg
gcagctgagatcagtcagaaaaccataaaaaagcacaagattttggacataggcttagcc
tatataaatcacctagtggagaaaggagagcatgacctggctgctcgaaagtgccagaaa
attcttggcaaaaacacagaactctgggaatttgaagtttacaagtttaaagaaataggt
caacttaaggcaattagtcgttacttgcccagacgagatccagttttgaaacctcttata
tatgagatggtcctgcacgagtttttggagagtgactatgaggggtttgcaaccctgata
aaagagtggcctggagatctctacaacaacacaatcatagttcaagctgtagtagatcac
ctgaagaaagatccacaaaacaggacattgctaagaacacttgcagaactgtatacttac
gatcagcgctatggcagagccctagaaatttacctaactttgaggcacaaagatgtcttc
cagttgatccacaagcacaatctgttcagttccatcaaagataaaattgttctgctcatg
gattttgattcggagaaagcagtagacatgcttttggataatgaagataaaatttctatt
gacagagttgttgaagagctagaaaatagacctgaactacagcatgtgtatttgcacaag
cttttcaaaagagaccaccataaaggacaacggtatcatgaaaaacaaatcagtctttat
gctgaatatgatcgtccaaatttactaccatttctcagagacagcacacactgtccgctg
gagaaggctctagagatctgccaacagagaaactttgtagaagagacagtttatcttcta
agcagaatgggtaacagccgcagtgcgttgaagatgataatggaagaattgcaagatgta
gataaagctattgaatttgccaaggaacaagatgatggagaactttgggaagacctcatt
ttatattctattgacaaaccaccttttattactggcttgttgaacaatattggaactcat
gttgaccccattcttttgattcatcgtattaaggaaggcatggagattcctaatttgaga
gactcgctagtgaaaattcttcaggactacaacttgcagatcttgctgcgggaaggctgc
aagaagattcttgttgctgactctctttctttgctaaagaaaatgcatcgaactcaaatg
aagggtgttctggtagatgaggaaaatatctgtgaatcatgcctgtctccaatacttccc
tcagatgcatccaagtccttcaatgtggtagtgttccactgcagacacatgtttcacaag
gaatgtctcccagtatctaatacagtatcttctgtccagttctgcaacatatgcagtgcc
aaacacagaggaccagggagcgcaatcttggagatgaagaaatag

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