Coturnix japonica (Japanese quail): 107310883
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Entry
107310883 CDS
T04297
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107310883 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107310883 (MSH2)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107310883 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
107310883
NCBI-ProteinID:
XP_015712430
UniProt:
A0A8C2SPW4
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Position
3:10172893..10195359
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AA seq
942 aa
AA seq
DB search
MAGGGSMAAEGPREAAWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGEYYSVHGADARL
AARELFRTRAVIRQLAGGTGNQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKS
VKENDWYLAYKGSPGNLAQFEEVLFASNDLSMAIGVVGVKLSSADGQRVIGVGYVDTTLR
KLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKAD
FTTKDIVQDLSRLLKSRKGEQMNTAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQFEL
TTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLM
DKNRIEERLNLVEAFVGDTELRQCLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAI
NQLPNVVRALEKHEGAHQMLLLAVFITPLNDIHSDFSKFLEMIETTLDMDKVENHEFLVK
ASFDPNLTELREKMNELEENMQALLKSAAKELGLEAGKSIKLESNSQLGHHFRITCKEEK
VLRNNSKYKITDTQKNGVKFTNSKLSAINEDYIKSREEYEEAQDAIVKEIINIASGYAEP
IQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFI
PNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILAR
VGAGDSQLKGVSTFMAEMLETASILRTASENSLVIIDELGRGTSTYDGFGLAWAISEYIA
SKIGAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVA
ELAAFPKHVIESAREKALELEEFQDIGRPKESEGEPAAKKRCREREEGEKIIQDFLCQVK
ALPLTDMSEEDIKTKLKQLRADVWAKNNSFVNEIISRTKVMP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggcggcagcatggcggccgaggggccgcgggaagcggcgtggccggaggga
gcgggggccgaggcggggttcgtgcgcgccgtgctatcactgcccgagaagcccgacacc
accgtgcgcttcttcgagcgcggagaatactactcggtgcacggcgcggacgcgcggctg
gcagcccgagagctgttccgtacgcgggccgtcatccggcagctggcgggcgggacagga
aatcagaaactggagagtgtcgtgctcagtaaaatgaactttgaatcttttgtgagagat
ctgctgctggttcgtcattacagagtggaagtttacaagaataaagcagggagtaaatcc
gtcaaagagaacgactggtatttagcatacaagggttctccaggaaatcttgcccagttt
gaggaagttctctttgccagcaatgacttgtcaatggccatcggggttgtgggggtgaag
ctgtcatctgctgatggacaaagagtcataggagtagggtatgtggacactacgctgagg
aaactgagcgtctgtgaattcccagataacgatcagttctcaaaccttgaagccctgctg
gttcagctgggacctaaggagtgtgtgctgccaggaggagacactgcaggagagatgggg
aagctgcggcaggtcattcagagaggaggaatcctgattacggacagaaagaaggcagat
ttcacaacaaaggatattgttcaggatctcagtcgcttgttaaagtcgagaaaaggagaa
caaatgaacactgctgcattgccagagatggaaaagcaggttgctgtttcatctttgtcg
gccgttatcaagtttttagagttgctgtcagatgactctaattttggacaatttgaactg
accacttttgatctgagtcagtatatggttctagataatgcagctgtccaagccctcaac
ctgttccagagttctgtggaaaatgctaataatacacagtctctggctggtttactaaat
aaatgcagaaccccccaaggacaaagactcgttaatcagtggatcaagcagccgcttatg
gacaagaatagaattgaagaaaggttgaatttggttgaagcctttgtgggagatactgaa
ctgcgtcagtgtcttcaagaggatcttttacgccgcttcccagatcttaaccggctggca
aagaaatttcagagacaagcagcaaccttacaggactgttaccgaatgtatcaagctatt
aaccaactgcctaacgttgtacgagcactagaaaaacatgaaggagctcaccagatgttg
ttgttggcagtgtttataacacctcttaatgatatccactccgacttctcaaaatttctg
gagatgatagaaacaacattggatatggataaggtggagaatcatgagttccttgttaag
gcttctttcgaccccaacctgacggaactgcgagagaagatgaatgagctggaagaaaac
atgcaggccttgttaaagagcgcagccaaagagcttggtttggaagctggtaaaagtatc
aaactggagtcaaattcacagcttggacaccactttcgaattacttgcaaggaggaaaag
gttctgaggaacaattcaaaatacaagataactgatacacagaagaatggtgtgaaattc
acaaacagcaagctgagtgccatcaatgaggattacataaagagcagagaagagtatgaa
gaggcgcaggatgcaattgttaaggaaattattaacatcgcttcaggttatgcagagcca
atacagaccatgaatgatgtaatagctcagttagatgcaattgtcagttttgctcatgtg
tcaaatggagcaccagtgccgtatgttcgtcctgtcattctggaaaaggggcaaggaagg
attgtgctgaaaggtgccaggcatccctgcatcgaagtgcaagatgaggtggccttcatc
cccaatgatgttacatttgagaagggcaagcagatgttccacatcattactggccccaac
atgggtggaaagtcaacatacatccggcagacaggagtcattgttcttatggcccaaatt
gggtgttttgtaccgtgtgactctgctgaaataaccattgtggattgtatcctggctcgt
gtaggagctggagacagtcagctgaaaggtgtgtcgactttcatggctgaaatgttggaa
actgcttcaatccttaggacagcatctgaaaactctttggtaatcattgatgagttggga
agaggaacttcgacctacgatggctttggcttggcgtgggctatttcagaatacattgct
agcaaaatcggtgctttctgtatgtttgctacgcattttcatgaactgacagctcttgcc
gatcaagttccaacagtaaataacctacatgtcactgctctaaccagtgacgacacactg
acaatgctgtaccgtgtcaaggcaggtgtttgtgaccagagttttggaatacacgtagca
gaactggcagctttcccaaagcatgtgatagaaagtgcaagagagaaagcactggagctg
gaggagtttcaagacattggcaggcccaaggaatctgaaggagagccagcagccaagaaa
cgctgcagagaaagagaggaaggagaaaagatcattcaggattttctgtgtcaagtgaaa
gcgctgcccctgacggatatgtcagaagaagacatcaaaaccaagctgaagcagctgaga
gccgatgtgtgggcaaagaacaacagcttcgtcaatgaaatcatttccagaacaaaagtt
atgccatga
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