Coturnix japonica (Japanese quail): 107312201
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Entry
107312201 CDS
T04297
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107312201 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjo03021
]
107312201 (CPSF3)
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107312201 (CPSF3)
Transcription machinery [BR:
cjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107312201 (CPSF3)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107312201 (CPSF3)
U7-dependent histone pre-mRNA processing factors
107312201 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
107312201
NCBI-ProteinID:
XP_015714889
UniProt:
A0A8C2TFM1
LinkDB
All DBs
Position
3:87809519..87819379
Genome browser
AA seq
694 aa
AA seq
DB search
MAAMAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMD
ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV
KVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAG
VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVN
RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND
KIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNG
VIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKP
PHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLA
DKKPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTLAIPYTGPFNLLFYQLQ
KLTGDVEEIEIQQKPALKVFKSITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNP
KIQKAAVQKVSTKVDTEEYRKRVEMMLQDMFGEDCVSSKEGSILCVTVDGKTANLSLETR
TADCEPGSEDDESLREMVELAAQRLYDALSPVYC
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatggcgaagcggaaagcggaggcgctgatcccggcggaggagagcgaccaa
ttgctcatccggcccctaggagctggccaagaagtaggaagatcatgcattattctggag
tttaaaggaaggaaaataatgcttgattgtggcatccatcctgggctggaaggaatggat
gcacttccttacattgacttgatagaccctgctgagattgacctccttctgattagccat
ttccatttagatcactgtggagctttgccgtggtttttgcagaagacaagttttaaagga
aggacgtttatgactcatgccacaaaagcaatttacagatggcttctgtcagactacgtc
aaagtcagtaatatatcagcagatgacatgctgtatacagaaacagatcttgaagaaagc
atggacaagattgaaaccatcaacttccatgaagtgaaggaggtggcaggcatcaagttc
tggtgttaccacgcgggccacgtactgggagcagccatgttcatgattgaaatagctggt
gtgaagcttttgtacacaggtgatttctcaaggcaggaggacagacacctgatggcagct
gagattcccaatattaaacccgatattcttatcattgaatccacctatgggactcatatt
catgagaaaagggaagagcgagaggcgcggttctgtaacaccgtccatgacattgtgaat
agaggagggagaggtctcattcctgtctttgccctgggccgggcacaagaactgctttta
attttggatgaatattggcaaaatcatcctgagctccacgacatccccatttactacgct
tcctcgctggcgaagaaatgcatggctgtttatcagacgtatgtcaatgccatgaatgac
aaaatccgcaagcaaatcaacatcaacaatccatttgttttcaagcatatcagcaatctg
aagagcatggatcattttgatgatattggcccaagcgttgtgatggcttcccctggtatg
atgcagagcggcttatccagggagctgtttgagagctggtgcacggataagagaaatgga
gtaattatagctgggtactgtgtggaaggaacgcttgctaagcatatcatgtccgaacca
gaagagatcacaactatgtcagggcaaaagctgcctctgaagatgtctgtggattacatt
tctttctctgctcacacagattatcaacaaaccagcgagtttatccgggccctgaagcct
ccacacgtgattttagttcatggtgagcagaatgaaatggccagattgaaggcagcattg
atacgggagtatgaagataacgacgaagttcatatagaagttcataatccgaggaatact
gaagctgtgacgttaaacttcagaggagaaaagcttgccaaggtgatgggctctttagca
gataagaagccggagcaaggacagagaatttctggaatcctggtcaaaaggaattttaac
tatcacatcctttctccgtgtgacctctccaattatacggacttggctatgagcactgtg
acacagacactggccattccatataccggccctttcaatctgctcttttatcagctgcag
aagcttacgggtgatgtagaggaaatagaaatccaacagaaaccagccctgaaggtcttc
aaaagtattactgtaatccaggaaccaggcatggtagtcctcgagtgggtggccaatcct
gccaatgacatgtatgcagacaccgtgaccacagtgatactggaagttcagtcgaatccc
aagatacagaaagctgcagtgcagaaagtttccacaaaagtagacacggaagagtatcgc
aagagagtggaaatgatgcttcaggatatgtttggagaggactgtgtgagttccaaggaa
ggctccattctgtgtgtcaccgtagatggcaaaactgcaaacctctcactggaaactcgg
acggctgactgcgagccaggcagtgaggacgatgaatccctgcgagagatggtggaactg
gctgcacagaggctgtacgacgccctcagccccgtgtactgctga
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