Coturnix japonica (Japanese quail): 107312844
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Entry
107312844 CDS
T04297
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107312844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107312844
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107312844
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
107312844
NCBI-ProteinID:
XP_015716122
UniProt:
A0A8C2U160
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Position
4:11541574..11560132
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AA seq
558 aa
AA seq
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MATELEPPAAGAVSGGAPLEAEEDEEHWLYGDDTTGKQEDGPTSGHAESSHPLQDAPQEN
RPVGSEDREVSQHALPSGEDDEEDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPAQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGASGSSSSHWEYSGSRRERERERERERDRDRTPTTSEYSNEDERYRYYGRERSYDFER
DYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKRSKEE
KETSEDGTQEGEEQDSKE
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggggccgtgtcgggcggggcgccgctggag
gcggaggaggacgaggagcactggctgtacggcgatgacaccactggtaagcaagaagac
ggaccaacttctggacatgcagaatcttctcatcctctgcaagatgctcctcaggagaac
cggcccgtcggcagcgaagaccgagaggtgtcacagcatgcccttccaagtggagaagat
gatgaagaagacagtgatagtgacagcgatgacgatgatgtgaaagttactattggcaat
attaaaacgggagcaccatcatacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagttgcagcccaaaggtattgatttagatgcc
gcagggaacataaacggattgcctgttatagaagtggatttagattcatttgaagacaaa
ccatggaggaaaccaggtgctgatctttctgattactttaattatggattcaatgaagaa
acgtggaaagcttattgtgaaaagcagcgacggcttcagcttgggctggatcctgctcct
cccatcagcactgaaaataagatcacggtccagcaaggaagaacaggaaatgctgaaaaa
gaagtggaaaataatatcataaaaacagaattcaaaacagacttcttggctctggtggga
ggacgcatgaaagctgggccacctcctaataggaagctgggtgggacaattgatgtgatc
ggtggccaggcaggcacaattagaagagtggaaggaagacgacgtgataagcatgcctct
gaagaaaacccaattcaggttcttggggatcatggaagcaaaccccagcccccgcagcag
ccccagcagccggcgcagccccagcagcccccacagcagcagccctttgctcccccagcc
ggtccaccaccacccccactggccggacccccaccaccgcatttcctgcaccctcctcct
cctgtcacctctgtgccaccaccactgcaccctccaggtttgccaccacccggtccaatt
ccagggctgttcccgccgcctctggccccaccgccagctctcctcatcccaacgctggat
gggcagccagccagctacaacaacagacagccccctccatttggctacaattctgcggac
tcgggtttcatcagctacccacccatctccacgtcccacacgccctgggtgaccacggtg
gacaaaggtgcgagcggctccagcagcagtcactgggaatactcaggctcacggcgagaa
agagagcgagaacgggagcgggaacgggacagggaccgcacacccaccaccagcgagtac
agcaacgaggacgagcgataccgctactacggtcgggagcgcagctatgactttgagcgg
gactatcgccgcagccgggaccgcagccgggagcgggaggaccgtcaccgtgagcgcagg
caccgcgacaaggaggagagcagcaagcacaagtcctcgaggcgcaagcagcatgagagc
gaggaaggggagagccatcggcgccacaagcacaagaagaacaagcgcagcaaggaggag
aaggagaccagcgaggatggcacccaggagggagaagagcaggacagcaaggagtga
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