Coturnix japonica (Japanese quail): 107313006
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Entry
107313006 CDS
T04297
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107313006 (DDX60)
Enzymes [BR:
cjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107313006 (DDX60)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107313006 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
107313006
NCBI-ProteinID:
XP_015716353
UniProt:
A0A8C2SLU7
LinkDB
All DBs
Position
4:complement(21838260..21874807)
Genome browser
AA seq
1827 aa
AA seq
DB search
MDSEEDNLKEAVHDYANQSADSDDNDGECVDSKKINFTATGEDKENESRSDSDEEDAADN
SEEAAVVQMLKEKEDREKEDEDPDYGEIYCNLATDEVIQQDESRDESRDFRVLQNKLDPQ
NPEIKKHLEILKKLKQNIWPSLSKALFVSLLKDFVESEFFVIDGDSLLLMFIDEEVQQLT
LFYQVECFLNDFTQKGAKYIIVFFKDTEQMYFQNPQILFIRTALIEHLKHNTCITIHTEF
SNCFSPEWEIFLKKSYPYFIIISDIGLTSLQTDYLTIFMSHSLSKKVNVVQAFGQEYDTL
RVYGYHLQSMWKHRMFFQKYEEDLRCACEAIVRYKEPSLYLYKHLKLSQKSIQNEVYQTA
LLLKKLWPEGSDIRRVICVLTCAVGLKLYSDMLGSAQASSGAKPEQSERERSKPLSPVEA
ADLCRMQCLTTVFLLHMPLSHRARIRIIESCWAKQVLPLIKMQQLCAHFVLKHLSDTNDW
KLDLTYLPDLNDDSLLRNLAHYYEIEYSEGLEFQKELGKEMEKEYQFLWDTVTKLTVNFD
FGDAFPIRNTSQVFIDHQRALFRVYDEKIPDIGLIPLKSDLVEEYAGDVLKDLPVLDSND
PTVTSLAKYKEFDELRHWHSDRPLTEEYERVRCSADAKSKDADGRKQIQKLQTFHRLYGS
TLEGSTAKFIVLQKDVPGNANTTVKKTKQIHKSKAEIITEENNRRLKAKEEKKEQEQWKT
LQASTEKEIKENPTIGINKLEKFLKTVKSKSVKFSIEMAGLMACVEAWKKHCRKQGNIPK
DLSGAVQVMRRIHILLEKYQDLLEKSHLQKLSQYLQLLGFENLAHTLSGQVREGRDDQNK
SNCDVEVGPARFQLQYMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESAVIVAP
TSSGKTYASYYCMEKVLKTSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPDGLVVCGVF
TRDYRHDVMNSQILVTVPQCLEILMLSPRCQNWTKRIQYVIFDEIHCLGGEIGAEVWEHL
LVTIRCPFLALSATISNPDHLTEWLQSVRRYWQCAEDKIKGSSTNSDKDFARKCKGRSTV
KEQKKSYRVRLVLYEERYNDLEKYVCSVTGNDFGIEHFHPCAALTVNHIENYGIPSDLSL
SPRESIQLYDTMVKVWQKWPRAQEMDPEEFVCFKNKIVIKKMDVRKYERELKKELTNWLK
VGQRQKVNEVLENLKPRPVDCSEHQKWRQFACFVDKLHEMNKLPAIFFIFGLDSVEKAAR
NVFLNLLEKQGNEHDPKMEREKEDIKNKLRKVNKTLMKYESVDIKKVKPSKIESMVMLFA
TRKQLQERLNKLTAIPSTCTYADPKAVDEDTLRKIFYRLRFQRKGYLHRMLARRGIGYHH
GSMAMRERQTVEMLFRMGYIKVVTATSTLALGINMPCRSVVFAEDSVFLDALNYRQMSGR
AGRRGQDMIGNVFFYDIPLPKVERLIKSNVPQLKGQFPLTISLILRLMLLAAKADDKMDA
KAKALSVLKHSLMSFKKERHTELLKIYFMFSLQFLIKEGYLDQEGNPMGFAGLVTHLHYH
EPSNFVLVSFLVKGLFHKLCQPITEGSTDFSEEVLEKLVLVLANLFGRRYLPACSKAFKH
TFYQSKVFLEDLPEDFADAVNEYNTKVEENFAHFLMTTAKLADMEEEYRLPLSKTDFTSE
KWHGSELASYLMDNIKRISAVSPFACLSGVVDDDLFHGENINKAVLHSLGINATNCPLLS
LKKYDNQGRNRPLNAYALDFYKHGSLIALATDNWLNEGEAYYLLKDFVLLIQSIRTSLSE
LCDDPNDHVLLAFQKLGEVYQSKLNAV
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggattctgaagaagataatctcaaggaggctgttcatgattatgcaaatcagagtgct
gatagtgatgataatgatggcgagtgtgttgacagtaagaaaataaacttcactgcaact
ggggaagacaaagagaatgaaagtagaagtgacagtgatgaggaggatgcagctgacaac
agtgaagaagcagctgttgtgcagatgcttaaagaaaaggaagacagagaaaaagaagat
gaagacccggattatggtgaaatttattgtaacttggccactgatgaagtgatacagcaa
gatgaaagcagagatgaaagcagggatttcagagttctccagaataaactggatccccaa
aaccctgaaataaaaaaacatcttgaaattctgaagaaattgaagcaaaacatttggcca
tctctatcaaaagcattgtttgtcagtctgttaaaagactttgttgagtctgaattcttt
gtgatagatggggattccttacttctcatgttcatagatgaggaagtacagcaactaaca
ctgttttaccaagttgaatgctttctgaatgatttcactcaaaaaggagcaaaatacatc
attgttttcttcaaggatacagaacagatgtacttccagaatcctcagattcttttcata
cgtactgcattaatagaacatctgaagcacaacacttgtatcaccattcatacagaattt
tccaattgtttttcaccagaatgggagatttttctgaagaaatcctatccttatttcatc
atcatatctgacataggactgacttctctccaaactgactatttgactatttttatgtct
cattcattgtcaaagaaagtaaatgttgtacaagcttttggacaggaatatgacactctt
agagtttatggatatcatcttcagagtatgtggaaacacagaatgttttttcaaaagtat
gaagaagatctgcgttgtgcctgtgaagccatagtcaggtacaaagaaccgtccctgtac
ctgtataaacatctcaagctgagccagaaaagcatacaaaatgaggtttaccagactgcc
cttctgttgaaaaagctgtggcctgaaggatcagacattcgtcgtgtgatctgtgttctt
acttgtgcagtaggattaaaactgtacagtgacatgctgggaagtgcacaagcttcctca
ggagcaaaaccagagcaatcagaaagagaaagaagtaaaccactatctccagtagaagcc
gctgacctctgtagaatgcagtgtcttacaacagtttttcttcttcatatgcctctttct
cacagagctcggattaggatcatagaatcctgctgggctaaacaagttttacccttaata
aaaatgcaacaactgtgtgcacattttgttctgaaacatctgagtgatacaaatgattgg
aaactggatttaacttatctgcctgacttaaatgatgattcactgctcagaaatcttgca
cattactatgagatcgaatactctgaaggattagagttccagaaggaattggggaaagaa
atggaaaaagaatatcagtttttatgggacactgtaaccaaactgactgtgaactttgat
tttggagatgctttcccaatacgaaatacatctcaagtatttattgatcaccagcgagca
ttgtttagagtctatgatgaaaaaattcctgatataggactaattccattgaaatctgat
cttgttgaagagtacgctggagatgttttgaaagacctacctgttttagacagcaatgat
cctacagttacttcacttgctaaatacaaagaatttgatgagcttcgtcactggcattct
gacagaccactgactgaggaatatgagcgagtacggtgcagtgccgatgcaaaatccaaa
gatgcagatggaagaaaacaaattcaaaagcttcagacttttcatcgtttatatgggagc
actttggaaggtagcactgccaagtttattgtactccaaaaggatgttccagggaatgct
aatactactgtgaaaaagactaaacaaatacataaaagcaaagcggaaataattacagag
gaaaacaacaggcgactaaaagctaaagaagaaaagaaagaacaggagcaatggaaaacc
ttacaggcatcgacagaaaaggaaataaaagaaaatccaaccattggaataaataaattg
gaaaagtttctcaagacagttaaaagtaaatctgtgaaattcagcatagaaatggcagga
ctgatggcctgtgtagaggcatggaaaaaacactgcagaaaacaaggaaacatacctaag
gatttaagcggtgctgtccaagtcatgagaagaattcatatactccttgaaaaatatcaa
gatcttttggagaaatcacatttacagaagctaagccagtatctacaacttcttggattt
gagaatttggcacacactctgtctggccaggtgagagaaggaagagatgatcagaataag
agcaactgtgatgttgaggtgggaccagctcgctttcagctgcaatacatggactattac
ttgctcagagaagagaggaatgatccagatccccgagtgcaacatttcataccagacaca
tggcagcgagaacttcttgatgctgtagataacaatgagtctgcggtaattgttgctccc
acatcatcaggaaaaacatatgcttcatattattgcatggagaaagttctgaaaacgagt
gatgaaggagtagttgtatatgttgctcccacaaaggcccttgtaaaccaagtggtggga
tctgtatacagtcgattcaccaaaaaacttccagatggattggtggtgtgtggagtcttc
acacgagattatcgccatgatgtcatgaattctcagatactagtgaccgtgcctcagtgt
ttagaaattttgatgctgtctcctcgttgccagaattggaccaaaagaatacagtatgtt
atatttgatgagatccattgtcttggaggtgaaattggagcagaggtttgggaacatctt
ctggtaacaattcggtgtccgtttttggctctctctgctactatcagtaatccagatcac
ctgactgaatggttacaatctgtgagaaggtattggcagtgtgctgaggacaaaataaaa
ggaagctctaccaactctgacaaggattttgcaagaaaatgtaaaggaagatctacagta
aaagaacaaaaaaaatcataccgtgttagactagtcctgtatgaagaaagatacaacgat
ttggagaaatatgtgtgttctgtaacaggcaatgattttggcattgaacattttcaccca
tgtgctgcattaacagtcaatcatattgagaactatggtattccttcagatctttccctg
tctccaagggagagcatccagctatatgacacaatggtgaaagtctggcaaaagtggcca
agggcacaggagatggatcctgaggagtttgtctgtttcaagaataagatagtgataaaa
aagatggatgtgaggaaatacgaacgggaactgaagaaagaactaaccaactggttaaaa
gttggacaaagacagaaggtgaatgaagtactagagaacctaaaaccccgacctgtggat
tgctcagaacatcaaaagtggaggcagtttgcatgctttgttgacaaattgcatgaaatg
aataaattgcctgccatattttttatatttggcttagattcagtggaaaaggcagcaagg
aatgtctttctaaatttgctggaaaaacaaggcaatgaacatgaccctaaaatggaaagg
gaaaaagaagatataaagaacaaactgagaaaagtgaataaaacgctaatgaaatatgag
tctgttgatatcaaaaaggtgaaacctagtaaaatagaaagcatggtgatgctttttgct
acgagaaaacagctacaggaaagacttaacaagcttactgcaatcccttctacgtgtact
tatgctgatcctaaagcagtggatgaagatactttgaggaagattttttatcgacttagg
tttcagagaaaaggttatctgcatcgaatgctggcacggaggggcattggctatcatcac
ggatctatggccatgagggaaagacaaacagtggagatgcttttcaggatgggatacatc
aaggtagtcacagctacctcaacacttgctctagggatcaacatgccatgtagatctgtt
gtgtttgctgaagattctgtctttttagatgcgctaaattacaggcagatgtcaggacgt
gctggaagacggggacaagatatgattggaaatgtgttcttctatgatattccactgcct
aaagttgaaagacttatcaaatccaatgtacctcaattgaaaggccagtttcctctgact
atttccttaatactgagactcatgctgttggctgcaaaggctgatgacaaaatggatgcc
aaagcaaaggcattgtcagtgctgaagcactcactgatgtcattcaagaaagaaagacat
acagaattattaaaaatttattttatgttttctttgcagtttcttatcaaagagggctac
ttggatcaagaaggtaaccccatgggttttgctggacttgtgacacacttacactatcat
gaaccttcaaattttgtcttagtgagttttcttgtgaaaggtttattccacaaactgtgc
cagccaattacagaaggctcaactgatttttcagaagaagtcctagaaaagctagtgctt
gttctagcaaatctgtttggaagaagatatcttccagcctgttctaaggcatttaaacac
acattttaccagtccaaggtctttctagaagatctgccagaagactttgcagatgctgta
aatgaatacaacaccaaagttgaggaaaactttgctcattttcttatgacaacagccaag
ctggcagatatggaagaagaatacagacttccactgtcaaagacagattttacatctgaa
aaatggcatggctctgaactagcatcttacttgatggacaacatcaaacgcatatctgct
gtctcaccttttgcatgtttatctggagtggttgatgatgatctatttcacggggagaac
attaataaagctgtactacactcccttggaattaatgccacaaactgccctctactttct
ttgaagaagtatgacaatcaaggaagaaacaggccactcaatgcatacgcactagacttt
tataagcatggctccttgattgccttggcaactgacaactggttaaatgaaggagaagca
tactacctcctaaaggattttgtactcctcattcagtccatacgcacatcactgagtgaa
ctgtgcgatgatccaaacgatcatgttctactggcatttcagaaactgggagaagtctac
caaagtaaactgaatgcagtctaa
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integrated database retrieval system
