Coturnix japonica (Japanese quail): 107313902
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Entry
107313902 CDS
T04297
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107313902 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjo03021
]
107313902 (POLR1A)
Enzymes [BR:
cjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107313902 (POLR1A)
Transcription machinery [BR:
cjo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107313902 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107313902
NCBI-ProteinID:
XP_015718064
LinkDB
All DBs
Position
4:complement(77461066..77489282)
Genome browser
AA seq
1711 aa
AA seq
DB search
MRPPKVVPWWRFARVSFGLYSADEIRKLSVKAITNPQYLDNVGNPSVNGLYDLALGPPDS
KEACATCMQNFNNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LCQLKVLEHGLLQAVHDLEVVLNRFLEQCEGATALEIEEELNRHVDEILQSQELSNQCSN
VKNVCECRNKLISQFWKAHMTSKKCPNCRSRRSLVRKEHNSKLIVTYPTTVFRKAGQEGI
MDKPAVIDETQLGKRGYLTPMTAKKFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFL
DLLVVPPSRYRPVNRFGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVEHD
IQTETGENDEPLDRSVLATIPGQTIADKLYNAWIRLQAHVNIVFDSDMDKLMTEKYPGIR
QLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVC
RHIKSGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYR
GLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIDGKAWMKG
PANSGLNLDSMCESQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCL
GRLFTAYLQLYRGFTMGIEDILVKPEADRKRRKIIRKSSQCGIEVVRAALNLPETASCED
VQGKWQDAHLCKDQRDFNMVDLKFKQEVNNYNNEVNKVCMPFGLHRCFPENNLQLMVQSG
AKGSTVNTVQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFSPGSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLDEALARMESHQAKQQFKAIRKWWARHQN
SVQRQGGFLLFSQKKMASVKAQISGGESKNGRDPATLQLLKMWYELDEKKRRKYLKKAMK
CPDPSLAVWRPDSYFASVSEKFENGVEDYINKRECKDGGGCVQPALSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PMMSVPVLNTKKARKKVKQLKKQLTRVCLAEVLQKIELEESLHLKNKENCHRLYKIRFCF
LPHECYEEEKCVKPRYILHFMETRFFKIFLEAIKRKRAKMSSFTEVSTRKATCKDLEGVG
DKAQNNQEAPEGEEEENIVDAEPDEGDGDATEAKMRRNQEEEVDYESEEENGEENAAENP
EDEEAESEKEEKAQDADEEDQNGADGNDSQQLSFMSQTKKERDKLLKSAEVRVNAVLNSH
PSIQDYTFDTEHELWCEVSLALPLMKVYFDISSLLLSLTRNTVIHEVKGITRCLLNESTN
EKGEKELILQTEGINLAELFRYSDILDLNRLYSNDIHAMANNYGIESALRVVIKEIKDVF
AVYGIEVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGA
HDELRSPSACLVLGKVVKGGTGLFDLKQPLT
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggtgccgtggtggaggttcgccagggtgtccttcgggttgtac
agcgccgacgagatcaggaaactgagcgtaaaagccataacaaaccctcagtatttggat
aacgtggggaatccttctgttaatggattgtacgacctggctctggggcctcctgattcc
aaagaagcgtgtgcaacgtgcatgcagaacttcaacaactgcccagggcactttggccat
atagaactgcctctgactgtctacaatcctctgttttttgacaaactttaccttctaatt
cgaggttcttgtttaaattgtcatatgctgacatgtactcgagctgtggttcatttgctg
ctatgtcagctgaaggttctggagcatgggttgcttcaagctgtccacgatcttgaagtc
gtcttaaataggtttttagagcaatgtgaaggtgcaacagctctagaaattgaagaagaa
ttaaatcgtcatgttgatgaaatattgcaaagtcaagaactgagcaatcaatgttcaaat
gtgaaaaatgtttgtgagtgtagaaataaattgatatcccagttctggaaagcacatatg
acttcaaagaaatgcccaaactgcagatcaaggagatccctggtgcgaaaagagcataac
agcaaactgatagttacttatcctactacagtgttccgtaaggcaggacaggaaggtatc
atggataaaccagcagtgattgatgaaactcagttagggaagagaggatacctgacacca
atgactgccaagaagtttgtcttggctctgtggaagaatgaaggtttctttctacgttac
ctcttccctgggatggatccccataaggactcagctttcagcccagacatgttcttttta
gatctgcttgtggttccaccttcaaggtatcgtcctgtaaatcgttttggagaccggatg
tttacgaacggtcagactgtgaacctgcaggctgtcatgaaagatgccaccttgatcagg
aagctcttggttttcatggcaaaagaacagtgccagccaattaaaattgtagaacatgac
atccaaacagagacaggtgagaatgatgagcctctggaccgttctgtgctggcaacgatt
ccaggacagaccattgcagacaagctttataacgcttggattcgtcttcaggcccacgtc
aacattgtgttcgacagtgacatggacaaactaatgactgagaagtaccctggtattcgt
cagctattagagaaaaaggaaggactgttccgcaagcacatgatgggaaaacgtgtggat
tttgcagctcgttctgtcatttgccctgatatgtacattggtaccaatgagattggcatt
cccatggtgtttgctaccaaactgacctaccctcagcctgtcactccctggaatgtcaaa
gagctgaggcaggctgtcataaatggcccaaaggttcaccctggggcttccatggtcatt
aatgaagatggatctcgtacagtactgagtgcaagcagcttgacccagagggaagccata
gctaagcagctgctcacaccttcttcaggtgcaccccagtcaggactgaagattgtttgc
cgtcatattaaaagtggagatgtcctgttactgaaccgtcagcccactcttcatagaccc
tccatccaagctcaccgggccagaatcctgcctggagagaaggtgctgaggctccactat
gccaactgcaaggcatacaatgctgattttgatggtgatgaaatgaacgcccatttccca
cagaatgagctgggtagagcagaggcctacaccttagcctttactgatgaacagtatcta
gttccaaaggatggcaaaccacttcctggattgatccaggaccacatgatttctggagtt
agcatgacaatccggggctgctttttcacaagagagcaatatatggagcttgtttatcga
ggactaacagacaaaaaaggaagaattaaaacctttcctcctgccattatgaaaccacaa
cgattatggacaggaaagcaggttgtttctacgttgttaataaacatcattccagaaaac
cacgtcccactgaatttgactgggaaagctaagatagatgggaaagcctggatgaaggga
cctgcaaacagtggtctaaatcttgactcaatgtgtgaatctcaggttattattagaagt
ggggaattgctttgtggtgtgttggacaaagctcacttcggcagctctgcctatggccta
gtccactgctgctatgaaatctatgggggtgaaaccagtggaaaagtgctaacgtgtcta
ggacgcctctttactgcttatctgcagctctacaggggatttacaatggggattgaagat
atcttggttaaacctgaagcagaccgcaaaagacgcaaaatcatcagaaagtcaagccag
tgtggcattgaagttgttagagcagctcttaatttgccagaaacagcatcatgtgaagat
gtccaagggaaatggcaggatgcccatctctgcaaagaccagagggattttaacatggtt
gacctgaaattcaagcaggaagtaaacaattacaacaatgaagttaacaaggtttgtatg
ccatttggtctgcataggtgctttccagagaacaatttgcaattgatggtacagtcagga
gccaaaggatccactgtaaatacagtacagatttcttgtttgctgggccaaattgagttg
gaaggtcgaaggcccccactgatgccatctggcaaatctctgccatgtttccaaccgtat
gatttttcccctggctcaggaggatttgtgactggcagatttctcactgggatcaaacct
tctgaattcttctttcactgcatggctggcagggaaggtctggtggatactgctgtcaaa
accagccgttctgggtacctacaaaggtgtatcataaagcatttggaaggactggtggtt
cagtatgacctgactgtacgggacagcgatggcagcgtggtgcagtttttgtatggagaa
gatgggctcgatatccctaaaactcagttcttacaacccgagcagtttcctttcattgct
gacaactatgaggtgattcaaaagacgaaccatctggatgaagccttagcaaggatggag
tctcaccaagcaaagcagcagtttaaagccatcagaaagtggtgggccaggcaccaaaac
tctgtgcaaagacaaggaggttttctattgttttcccagaagaaaatggcaagtgtaaag
gcacaaatctcaggaggagaaagcaaaaacggaagagatcctgctactttacagttattg
aagatgtggtatgagctagatgagaagaaacgaagaaagtatctaaagaaggccatgaag
tgtcctgacccaagtcttgcagtttggcgtccagattcctactttgcatctgtttcagaa
aaatttgaaaatggagttgaagattatatcaacaaacgagaatgtaaggacggaggaggt
tgcgtgcagccagcgctttcatctgatagattaaaggatttgttatatttgaagtggcaa
cggtctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggag
ccttccacacagatgactctgaacaccttccattttgctggcagaggtgaaatgaatgtc
acgctgggtattccaaggttacgggaaatcttgatggtagccagtgcaaatattaaaaca
ccaatgatgagtgttcctgtgctcaataccaagaaagctcgcaagaaggtgaaacagctc
aagaaacagctcacaagagtgtgcttagctgaggtcttgcagaaaattgagttggaggaa
tccctgcacttaaagaacaaggagaactgccatcgcctctacaaaatcagattctgcttc
ttgccccatgaatgctatgaagaggagaagtgtgtgaagcccaggtacatcttacacttc
atggaaacaagattctttaagattttcctggaagccattaaaaggaagagagccaagatg
tcatcttttactgaagtcagtacccgcaaagcaacttgtaaagatttagaaggagttgga
gacaaggcacaaaataatcaagaagctccagaaggtgaggaagaagaaaatattgttgat
gcagaacctgatgaaggggatggtgatgctacagaagcaaaaatgaggaggaaccaggaa
gaagaggttgattatgagagtgaagaagagaatggggaagaaaatgctgccgagaatcca
gaagatgaagaagctgaatcagaaaaggaagagaaagcccaagatgctgatgaagaagat
caaaatggagcagatggcaatgattctcaacagctttcctttatgtctcagactaaaaaa
gaaagagataaattactgaagtcagcagaggtgcgagtaaatgctgttctgaacagccac
ccatccatacaggactacacatttgacactgaacatgaactctggtgtgaggtttcattg
gcgcttccattgatgaaggtgtactttgatatctcctctttgcttctttctctaacacgg
aacacggttatacatgaagtgaaggggatcacacgatgcctgttgaatgaaagtaccaat
gagaaaggagagaaagaactcattctgcaaactgaagggataaatcttgcagagctgttc
agatactctgatattttggacctgaacagactttattccaatgatattcatgccatggct
aataattatggtattgagtctgccctgagggtcgttataaaggaaataaaagatgtattt
gctgtatatggcattgaggtagaccctcggcacctctcgctcgtggcagactacatgtgt
tttgaaggagtttataaacccatgaatcgttttggaatccagtccagctcctcccctttg
caacagatgacatttgaaaccagttacaaattcctgaaggaagcaacaatgatgggtgcc
catgatgaactgagatccccttctgcgtgcctggtgcttgggaaagttgttaaaggaggg
actggtttgtttgacctgaagcaacccctaacgtag
DBGET
integrated database retrieval system
