Coturnix japonica (Japanese quail): 107314174
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Entry
107314174 CDS
T04297
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107314174 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107314174 (PATL1)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107314174 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
107314174 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107314174
NCBI-ProteinID:
XP_015718621
LinkDB
All DBs
Position
5:complement(200440..205482)
Genome browser
AA seq
754 aa
AA seq
DB search
MFRYPSLEECPLDEEEDGFQVLGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
VGSGQQAQPSSEDAELLGEPEDALAERLTRLVIESELEDPAIMRAVHTRGSAAQSVTLNT
SIWDGPSVLQRIRTPLLTQEMPSLSVLDYALPQRPPQAREEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQATMPNFNQQILCPKPVHIRATMQQRYSAPYGERMSPNQLCNVPNS
SLLGHPFPTSVSPVLTHLQRAQLLGGAQAGRISPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMAPTGGFRAFFGAGPTPPSQPQPPPGPMPHLQGLRPQPFRLDTTHLHPQHRRLLHQR
QQQNRNQHRGLNGSVGDRGGHRGSHQEQVRKDPYANLMLQREKDWVSKIQMMQLQSTDPY
LDDYYYQNYFQKLEKLSAAEEDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSV
NNPRKMIDAVVTSRGEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEDE
RPALVGERQQKICNMYDNLRGKTPGQERLSDDHFMQIMCIRKGKRLVARILPFLSPEQAA
EVLLATARNLPFLIKKDAQDEVLPSLLRPFSHVLYHLPLGTLSSLVQQLTNLPQSTAAPP
TANLHLATVLQNKFGLSLLYLVLSRGEELQSTDGGTKLMQDNQWTELMLLAARELLRVPP
TALPKPVPPPSNVLALFSRYIDQQKLNVLQNKLQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggagtgcccgctggacgaggaggaggacggcttccag
gtgctgggcgaggaggatgaggacatcgatcagttcaacgatgacacctttggggccggg
gctgtcgatgatgactggcaggaggcccacgagcggttggctgagctggaggagaaaccc
gtgggctcagggcagcaggcccaacccagcagtgaggatgcggagctgctgggggaacct
gaggatgcgctggcggagcgactgacacggctggtgatcgagagcgagctggaggaccct
gccatcatgagagccgtgcacacccgtgggtctgctgcacagagcgtgacgctcaacacc
agcatctgggatggcccctctgtgctgcagcgcatccgcacgccactgctcacacaggag
atgccatcgttgtccgtgctggactacgctctgccccagagacccccacaggctcgggag
gaggagcgggacccctcggaacgggcactgccacgccgctcatcctcccccatcatcggg
agcccccccgtgcgagcagtccccatcggcaccccacccaagcaggccaccatgcccaat
tttaaccagcagatcctgtgtccaaagcctgtccacatccgggctaccatgcagcagcgc
tactctgctccctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaactct
tccttgctgggccacccgttccctaccagtgtctctcccgttctcacccacctgcagcgg
gcacagctgctgggaggtgcacaggctggccgaatttctcctagccagtttgctcgagtc
tcaggccttgttgggagcccactaccctccgtcaaccccaagctgctgcagggcagagtg
gggcagatgatggctcccactggtggctttcgtgccttcttcggggctggccccactccg
ccctcacaaccgcagcctccgccgggccccatgcctcacctgcagggcctgaggccgcag
cccttccgactggacaccacccacctgcacccccagcaccgccggctcctgcaccagcgg
cagcagcagaacagaaaccagcaccgtggcctcaacggctcggtgggggaccgagggggc
caccggggcagccaccaggagcaggtgcgcaaggacccctacgccaacctcatgctgcag
cgggagaaggactgggtgtctaagatccagatgatgcagctgcagagcaccgatccctac
ttggacgactactactatcagaactacttccagaagctggagaagctgtcagcagctgag
gaagatggtcccaagaaggagcgtacgaagctcatcacccctcaggtggcaaagctggag
cacacctacaagccagtgcagtttgagggctctcttgggaagctgacggtctccagtgtg
aacaaccctcggaagatgatcgatgcagtggtgacctcccgtggagaggatgatgagaca
aaggagaagcaggtccgggacaagcggcgccagacactcgtcaccattgagaagacatac
agcctcctccttgacgtggaggactatgagaggcgctacctcctgagcttggaggacgag
cggcctgccctggtgggtgagaggcagcagaagatctgcaacatgtacgacaacctgcgt
gggaaaacaccggggcaggagaggctgagcgatgaccacttcatgcagatcatgtgcatc
cggaaaggaaagcgcctggtggcccgtatcctccccttcctgtcccccgagcaagcggcc
gaggtgctgctggcaaccgcccgcaacctgcccttcctcatcaagaaggatgctcaggat
gaggtgctgccctccctgctgcggcccttctcacacgtcctgtaccacctccccctgggt
acgctcagcagcctggtgcagcagctcaccaacctacctcagagcaccgccgcgcccccc
accgccaacctgcacctggccaccgtgctccagaacaagttcgggctgtcgctgctgtac
ctggttctgagccgcggggaggagctgcagagcacggacggcggcacgaagctgatgcag
gacaaccagtggacggagctgatgctgctggctgcccgcgagctgctccgagtccccccc
accgcgctgcccaaaccggtgccgccccccagcaacgtgctggccctgttctcccgttac
atcgaccagcagaagctcaacgtgctgcagaacaagctgcagtga
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