Coturnix japonica (Japanese quail): 107315488
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Entry
107315488 CDS
T04297
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107315488 (PRPF39)
Spliceosome [BR:
cjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107315488 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_16
Mad3_BUB1_I
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
107315488
NCBI-ProteinID:
XP_015721395
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All DBs
Position
5:complement(53366118..53382505)
Genome browser
AA seq
705 aa
AA seq
DB search
MRGPRCAVCPGAARGGRAAVCAEDSMENSTVQNSDNTEEEKATMATAVSNDSTGNGAETS
TEEQNMDFSTEIMSVTEMEQSPDSSPDLNEDNTQEEGEIPNIGSLQTTDIEAGFPPDFDK
FWRVVEDNPQDFTGWVYLLQYVEQENHLPAARKAFDKFFTHYPYCYGYWKKYADLEKRHD
NIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAAGTDF
RSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQLYSNHFQRFKDHVQNNLPRDLLTAE
QFVQLRRELASVNGHAGGDASAGDDLPSGTEDITDPAKLITEIENMRHRIIEIHQEMFNH
NEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISC
ALYEDFWIKYAKYMENHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEARRI
LKTFEECILGLAMVRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFYAIKLARHLF
KVQKNLPKARKVLSDAIEIDKENTKLYLNLLEMEYCGDLTQNEENILSCFDKAVNGSLSI
KMRVTFSQRKVEFLEDFGSDVNKLLDAYDEHQALLKEQDTLKRRAENGAEEPDEKKMLTE
EQTMASAQMMDGDMQVNQAAYNYNAWYQYNYQNAWNYGQYYSPST
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcccgcgctgtgctgtgtgtcccggcgctgcgcgaggcggccgcgctgctgtg
tgcgctgaggacagcatggaaaactcaactgtgcagaactcggataatacagaggaggag
aaggcaacgatggcaacggctgtaagcaatgacagcactggcaatggcgctgaaacatca
acagaagagcagaatatggacttcagcacagaaattatgagtgtaactgagatggaacaa
tcgcctgatagttctcctgacctgaatgaagacaacacacaagaagagggtgaaatccca
aatattggaagtttacagacgacagatattgaggctggattccctccggattttgacaag
ttctggagagtagtagaggacaatccccaggatttcacaggatgggtctatctgctacag
tacgtggagcaagagaaccacttaccagctgccaggaaagcatttgacaagtttttcacg
cactatccatattgctatgggtactggaagaagtatgcagacctagaaaagcgacacgac
aacattaagcaatccgatgaggtttatcgcagagggcttcaggcaattcctcttagtgtt
gatctttggatacattatataaacttcttaaaagacaccttggaccctgatgaccccgaa
gctaacagtactattcgaggagcctatgaacatgcagttttagctgctgggacagatttc
cgttctgacagactgtgggaaatgtatataaactgggaagatgagcagggaaacctgagg
gaagttacatccatatatgatcgtatccttggaattccaacacagctctacagtaatcac
ttccaaaggtttaaagaccatgtccagaacaacttgcctcgggacctcctgactgctgag
cagtttgttcagctgcgcagggagctcgcatctgtgaatggccatgcagggggcgacgcg
tcggctggcgacgatctgccctcgggtaccgaggatatcactgaccctgccaagctaatc
actgaaatagagaacatgaggcacagaatcattgagattcatcaggaaatgttcaatcac
aatgaacatgaagtcagtaagaggtggacatttgaagaagggataaagaggccttacttt
cacgtgaaacctttggagaaagctcagctaaaaaactggaaagagtacttagaatttgag
atagaaaatgggacgcatgaacgagttgtggtcctctttgagagatgtgttatttcatgt
gccctctatgaggacttctggattaagtatgccaaatacatggagaatcatagtattgaa
ggagtgaggcatgtctacagcagggcttgcacaatacatcttcctaagaaaccgatggtt
cacatgctgtgggctgcctttgaggaacagcagggcaacattgatgaggcgaggagaatc
ctgaagacatttgaggagtgcattctaggcctagcaatggttcgcttgcgaagagtgagc
ttagagcgcaggcatgggaacatggaagaagccgagcgcctgctggaagaagctgttagg
aatgccaagtcagttagtgaatcgtcattctatgccatcaaattagctcggcacctcttc
aaagtgcagaaaaatcttccaaaggcaagaaaagtgctgtcagatgccatagaaatcgac
aaagaaaacacaaaactgtatctcaacttgcttgaaatggagtactgtggtgatctcaca
caaaacgaagaaaacattttgagctgttttgataaggctgtgaatggctcgctgtctata
aaaatgagggttacgttttcacagcgaaaagtggaatttcttgaagattttggttctgat
gtaaacaagcttttggatgcctatgacgaacaccaagcacttctgaaggagcaggatact
ttaaagaggagagcagaaaacggagcggaggagccagatgagaagaaaatgctcacggag
gaacaaaccatggcatcagcacagatgatggatggagacatgcaggtcaatcaggcagca
tacaactataatgcctggtatcagtacaattaccagaacgcgtggaattacggacagtat
tattctccttcaacttga
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