Coturnix japonica (Japanese quail): 107316344
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Entry
107316344 CDS
T04297
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107316344 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107316344 (SF3B1)
03036 Chromosome and associated proteins [BR:
cjo03036
]
107316344 (SF3B1)
Spliceosome [BR:
cjo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107316344 (SF3B1)
Complex B
107316344 (SF3B1)
Complex C
U2 SnRNP specific factors
107316344 (SF3B1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107316344 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
107316344
NCBI-ProteinID:
XP_015723161
LinkDB
All DBs
Position
7:28391..47401
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcgcagatccgagaaattcaaggc
aaaaagcctgccctcgatgaagcacaaggagtgggcctcgactccaccggatattatgac
caagaaatctatggtggcagtgacagcaggtttgctggatacgtaacttccatcgcagca
actgaattggaagacgatgatgatgattacccatctacaagtttgcttggccagaagaag
ccggggtaccatgctccagtggcactgcttaatgacattccgcagtcaactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtctcgatccttttgcagatggagggaag
acaccagaccctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaagaagagagggagattaggcagcagctagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcgtctcagccaccttcaaagcgcaagcggcgttgggatcaa
acagctgatcagactcctggtgcaacacctaagaagttatccagttgggatcaagcagag
actcctggacatacaccatccctgcggtgggatgaaactccaggccgtgcaaagggtagt
gaaactcccggtgccacccctggctcaaagatatgggatcccactcccagtcacacgcca
gcaggagccgcaacgcctggacgggacacacctggtcatgcaacaccaggccatggaggt
gccacttccagcgcacgtaaaaatcggtgggatgaaactcctaaaacagaacgagatact
ccgggacatggcagtggatgggctgagactccacgtactgatagaggtggtgattccatt
ggcgagacaccaaccccaggagcaagtaaaagaaagtcccgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggaacacca
gctatgaacatggcaactcctacgccaggtcatatcatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaatcgatgagagaaacagaccactttctgatgaagaa
ttggatgctatgttccctgaaggatataaggttcttcccccaccagctggttatgtacct
attcgtactccagcacgtaaacttacggcaactcccacacctttgggtggtatgactgga
ttccacatgcagacagaggaccggactatgaagagtgtcaatgaccagccttctggcaac
cttccattcctgaagccagatgatatccagtattttgataagctgctggttgatgttgat
gaatcaactcttagtcctgaagagcagaaggagaggaagataatgaaattacttctgaaa
ataaagaacggcacacctcccatgagaaaggctgcattgagacaaattactgataaagct
cgggaatttggagctgggccgttgtttaatcagattctgccattgctgatgtcaccaaca
ctggaggatcaggagcgccacttacttgtcaaagtcatagacagaattctgtacaaactg
gatgacctggtccgaccatacgtacataagattcttgttgtcattgaaccactgctgatt
gatgaagactattacgccagagtggaaggcagagaaattatttccaacttggctaaggct
gctggtttggcaacaatgatttctacgatgcgacctgatattgataacatggatgaatat
gtccgaaataccacagctcgagcctttgctgttgttgcctctgctttgggcattccttct
ctgttgccgttcttgaaagctgtctgtaaaagcaaaaaatcctggcaagcgaggcataca
ggcatcaagattgtgcagcaaattgctattcttatgggttgtgctatcttgcctcatctc
aggagcttggttgaaattatcgaacatggtcttgtggatgagcagcagaaggttcgtacc
atcagtgctttggctattgctgctttagctgaggcagctactccctatggtattgagtca
tttgattccgttctgaagcccttgtggaagggtatacgtcaacacagaggaaaggggttg
gctgcctttttgaaggctattggttacctgataccgctcatggatgctgagtatgccaac
tattataccagagaagtcatgcttattcttatcagagagttccagtctcctgatgaagag
atgaaaaagattgttttgaaggtggtaaagcaatgctgtggtacagatggtgttgaagca
aactacattaaaacagagatcttgccaccatttttcaaacacttctggcagcacagaatg
gcattggacaggaggaattacagacagctggtggatacaacagtggagctggcaaataaa
gttggagcagcagaaataatttctaggattgtggatgatctgaaagacgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggtgcggcagac
attgatcacaagctagaagaacaacttattgatgggatcttgtatgcctttcaagaacag
accacagaggattctgtgatgctgaatggctttggcacagtggttaacgcccttggcaaa
agagtgaagccctacttgccacagatctgcggtactgttctgtggcgtctgaacaacaag
tcagctaaggtgcggcaacaggctgctgacctcatctctcgtaccgcagtggtcatgaag
acttgtcaagaggaaaaactgatgggacatctgggagttgtgttgtatgagtacctgggt
gaagaatatcccgaagtactgggcagcatactcggagcacttaaggctattgttaacgtc
ataggtatgcacaagatgacccctcctatcaaagatctgctgccccggcttacgcctatt
ttgaagaacagacatgagaaagtacaggagaattgtatcgatctggttgggcgtattgca
gacagaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgagctgctt
gagttactaaaagctcacaagaaagctattcgaagagccacagtaaatacttttggatat
attgcaaaagctattggacctcacgatgtcttggctacactgctgaataacttgaaagta
caggaaaggcagaacagagtatgtactactgtagccattgctattgtagctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggcgtgttgaaatctctttctttcctgtttgagtatattggagagatgggaaaa
gattatatttatgccgttacgccattgcttgaagatgctttaatggacagagatcttgta
cacagacaaacagccagtgctgtggtgcagcacatgtctcttggtgtttatgggtttggc
tgcgaagattctcttaatcatttgttaaattacgtatggcctaatgtgtttgaaacctct
ccgcacgtcattcaggctgtcatgggggctctggagggcctcagagttgctattggccct
tgccgaatgttgcagtattgtctgcagggtttgtttcaccctgcccggaaagtcagagac
gtttattggaagatttataattccatctacattggctcacaggatgctctgatagcacat
tatccaaggatctataacgatgaaaagaacacctatattcgttatgaacttgactacatc
ttataa
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