Coturnix japonica (Japanese quail): 107316424
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Entry
107316424 CDS
T04297
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107316424 (PMS1)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107316424 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HATPase_c
HMG_box_2
HMG_WDHD1
STI1-HOP_DP
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
107316424
NCBI-ProteinID:
XP_015723334
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All DBs
Position
7:complement(4365855..4405141)
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AA seq
943 aa
AA seq
DB search
MGGAGTGRPRGSGTSSFFDSNSTMKQLSAETVRLLSSSQVITSVVSVVKELIENSLDASA
TTIDIRLENYGFDKIEVRDNGNGIKVADVPVMAIKHFTSKISSSEDLEQLTTYGFRGEAL
GSICCVSEVLVTTKTADDDISTQYVLDSTGHITSQKPSHLGQGTTVTVLKLFKNLPVRKQ
FYSTNKKCKEELKKVQDLLVAYGIIKPELRITFVHNKAVLWQKNRVSDHKMACMSVLGTA
VMGSMVPFQHRCEDPEINLSGFLPKADSSSSLTSLSSSERSFIFINERPVHQKDILKLIR
QYYSVLMQKDSTRLYPVFFMNITVPASAVDVNVTPDKTEVLLHYKESVLFAVENVLKTLY
GPLPASVPGEANKTAVTSEDVFVHKVGQTDVVVNEKEPSGNNDLHACTSFLSFSSDVQSC
QAGKNTEICLNHQVLSGDTLHSRLEEKEASKNDAFQEGSLSFLCEEEQNGQNTTGIPRKS
APTDPGSKKDGGHLLSSDNAEEALVPEDLPEISADSWSMGNAFKSSSGDNLEPVKVLIPE
AGGAVNRQSERSDEQSHDPQIPNQSTRKTNVIDEKTGHVTAYDLINGRIIRKSKSAFEHF
IQEYRSKLFSENPRCSMKDILLKIEEQWKNLNEEDKQEYEIKAARDLERYNREASKAMHQ
EPRKPIKEKERQKARLKTSLPNQQKLDKMLHAQVDKKPKCYQPVKVVTVPFSLSACRPQF
PRHEKSNSDKHELCLIRRQSFPDIWIFATEKKLMLLNPYRLEEALLHKRLLRNHKLPVEK
LDKPIVLSDSLLGEPHYMDALHKMQKDNQTLSGWSYLSDPRLVANGFQIKVIQGSSATES
HMEIEGMANCLSYYGVSDLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLARQLPLH
LSKEDVENTIYRMKQQLGRENKGCVHGRPFFHHLTDIPEVNKP
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggaggggccggcacgggccgcccacggggcagcgggacgagcagcttctttgattct
aattccactatgaagcagctgtcagcagaaactgttcgtctgctttcgagttctcaagtg
attacgtcagttgtcagcgtggtgaaggagctgatagaaaactccttggatgccagtgct
acaactattgacattagattggagaattacgggtttgacaaaatagaagtaagagacaac
ggcaatggaatcaaggttgctgatgttcctgtaatggcaattaaacacttcacctccaaa
ataagctcttctgaggatcttgaacagttgacaacatacggtttccgtggggaagccctg
ggatccatttgttgcgtatcggaggttttggtcacaacaaagacagctgatgatgatatc
agcactcagtatgttttggatagtactgggcatataacttcccaaaaaccttcccatctt
ggtcaaggtacaacagtgacagtcctcaagttgtttaagaaccttcctgtgaggaaacag
ttttactcaacaaataaaaaatgcaaggaagaactgaaaaaagtccaggacctcctggta
gcatatggcatcataaagcctgaactgagaataacctttgtacataataaggcagttctt
tggcagaagaacagggtgtcagatcacaaaatggcctgtatgtcagttctgggaacagcc
gttatgggcagtatggtaccttttcagcaccgctgtgaagatcctgagataaatctttct
ggattccttccaaaagctgactcaagcagctctttgacaagtctctcaagttcagaacgg
agttttatttttataaatgaacgtccagttcatcagaaggacatattaaagttaatccga
cagtactacagcgtgctgatgcagaaggacagcacacgcttataccccgtgttctttatg
aatattactgtacccgcctctgctgtggatgtgaatgtaacacctgataaaactgaagtt
ctgctgcactataaggagtctgtcttatttgctgttgaaaatgtgttgaaaactttgtat
gggccactacctgcttcggtccctggtgaagctaataaaacagctgttacctcagaagac
gtgtttgttcataaagtaggacaaacagatgtggttgttaatgaaaaggaaccatctgga
aacaatgatctacatgcttgtacttcattcctttcattcagcagtgatgtgcaaagttgt
caagcaggaaaaaacacagagatctgtttaaaccatcaggtactctctggtgatacttta
catagtcgcctagaagaaaaagaggcttctaagaatgatgcctttcaagaaggctcctta
agtttcttgtgtgaggaggagcagaatggacaaaatacaactggtattccaagaaaaagt
gctcctacagatcccgggtctaaaaaagatggtgggcaccttttgagctctgataacgct
gaagaagccttagtccctgaagacttacctgaaatatctgctgatagttggagtatggga
aatgcttttaaaagctcctcaggagacaacctggaacctgttaaggttttaattcctgaa
gctggaggagcagttaataggcaaagtgagcgtagtgatgaacaaagccacgatccacaa
atcccaaatcaaagtaccaggaaaacaaatgtaatagatgaaaaaacaggacacgtaaca
gcttatgatttaattaatggtcgaataataaggaaatccaagtctgcatttgaacatttc
atccaggaatatcgttccaagttattttctgaaaatccaaggtgtagcatgaaggacatc
ctgttgaaaattgaagagcaatggaagaatttaaatgaagaagacaagcaggagtatgaa
ataaaagctgctagagacctggagcggtacaacagagaggctagcaaagccatgcatcaa
gaaccacgcaaacccataaaggagaaagaaagacagaaggccaggctgaagacttctcta
cccaaccagcagaagcttgacaaaatgttgcatgctcaagttgataagaaaccgaagtgt
tatcagcctgtgaaagttgttacagtgcctttttctctgagtgcctgtagacctcagttt
ccaaggcacgagaagagcaattcagataaacatgagctttgcctaatccgtcggcagagt
tttcccgatatttggatatttgctactgaaaaaaagctaatgttgctgaatccatataga
ctggaagaagccctgctgcataaaagactgctgaggaaccataagcttccagtagagaaa
ctggacaagccaattgtgttatcagacagtcttcttggtgaacctcactatatggatgct
cttcacaaaatgcagaaggataaccagacattaagtggatggagctatttgtcagatcca
aggcttgtagcaaacggcttccagataaaagtgatacaaggttcttcagctacagaaagc
catatggaaatagaaggaatggccaattgtctgtcatattatggtgtttctgacttgaaa
gaaattctcaatgcagtcgttaatagaaacgcaaaggaagtatatgaatgtaggcctctc
aaagtgataaactacttggagggagaagcagtgcgtttagctcggcagctgcccttgcat
ttgtcaaaagaagatgtagaaaacacaatttacaggatgaagcaacagcttggaagggaa
aataaaggctgtgttcacggtcgtcctttttttcatcacttaacagatattccagaagtt
aacaagccataa
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