Coturnix japonica (Japanese quail): 107316478
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Entry
107316478 CDS
T04297
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107316478 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107316478 (BARD1)
04121 Ubiquitin system [BR:
cjo04121
]
107316478 (BARD1)
03036 Chromosome and associated proteins [BR:
cjo03036
]
107316478 (BARD1)
03400 DNA repair and recombination proteins [BR:
cjo03400
]
107316478 (BARD1)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107316478 (BARD1)
Ubiquitin system [BR:
cjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107316478 (BARD1)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107316478 (BARD1)
DNA repair and recombination proteins [BR:
cjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107316478 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
NIBRIN_BRCT_II
Ank_KRIT1
ANK_LRRK2
Prok-RING_4
zf-RING_UBOX
DUF1272
zf-RING_2
Zn_ribbon_tTFIIB
Motif
Other DBs
NCBI-GeneID:
107316478
NCBI-ProteinID:
XP_015723478
UniProt:
A0A8C2TSR9
LinkDB
All DBs
Position
7:complement(8124177..8162958)
Genome browser
AA seq
774 aa
AA seq
DB search
MREVLRGRSGNRPEPGGHSGSTAPMARCWAHTRAALEGLERALSCSRCAGVLREPVSLGG
CEHVFCLSCVDDYIGKGCPVCHVPAWVQDVQVNRQLDDMVQLCSKLRHLLGSGTSDSMES
TATPMCSDIGGNSNKEHIKMWFSPRSRKIRCIMNKNQIKTSSNDLCQDPSSVYHFFPSPV
DEKPSKPTKKPTQRQSKKMKKKRLADINRVWCLEKPEQKGGVQEKTSKEKSVTICSEPVV
LCTPEASNPKEALPQESTQEADSTKNLEEVEVSPEVKPSEEEDNDEAVCPVQVSKDKNCA
AEKLPSIESEAMPLKRGREQSELPGTSQFKRQRGEGRLNGSSDSQTCSEDLSQDRPIPQV
TEPKTPVQVCGSVMKTRSSAARSSPSLPETPSTPSTFKACNQAGIPQSPSVFRSPGSNPI
ARRNYKGETLLHLASIKGDLAAVEELLKNGADPNIKDNAGWTPLHEACNHGHQEVVELLL
QHKALVNSTGYQNDSPLHDAAKNGHVSIVELLLLHGASRDAVNIFGLRPVDYAESEKMKS
VLMLPVKNESFSFSQLSESPSQPRDGPIGILGSSLSSKQQKLLSRLATVLKARRCTEFNS
TVTHVVIPDIPMPSTVKCMMAVLTGCWVLKFEWVQACLQSTVREQEEKYEIQGGPQRGRL
NKEQLLPKLFDGCYFYFLGSFASHQKSDLVELVKAGGGQILVRQPKPDSDVTQTINTVAY
HAESTSDQRFCTQYVVYDASSKFKPKKIRQGKVWFAPSSWIVDCIMSFQLLPVK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaggtgctgcggggccgctcgggaaacaggccggagcccggcggacattccggc
tccaccgcccccatggcgaggtgctgggcacacacccgagccgcgctggaggggctggag
agggcgctgagctgctctcgctgtgctggtgtgttgcgggagcccgtgtccctggggggc
tgcgagcacgtcttctgcctatcttgcgtggacgactacattggcaaagggtgtccagtg
tgtcatgtgccagcctgggtgcaagatgtgcaggtaaaccgtcaactggatgacatggtc
cagctctgcagcaaactgcggcatctcctgggttcaggcacctcagattcaatggaatct
acggctacaccaatgtgctcggatattggaggaaacagtaacaaggaacatataaaaatg
tggttcagtccaagaagtaggaagattcgatgcatcatgaacaagaatcagataaagact
agtagtaatgacctttgtcaagacccatcttcagtttatcatttctttccttcccctgtt
gacgaaaagccttctaaaccaacaaaaaaaccaactcagaggcagagtaagaagatgaag
aaaaaacgtctggcagacatcaacagagtgtggtgtttagagaagcctgagcaaaaagga
ggggttcaggagaagacctccaaggaaaagagtgtgactatttgcagtgagcctgtagtc
ctgtgcactccagaagcaagtaatcccaaagaggcacttccacaggagtctacacaggaa
gctgactccaccaaaaacttggaagaagtggaagtatctccagaggtgaaaccctcagag
gaagaagataatgatgaggctgtctgtcctgtacaagtcagcaaggacaaaaactgtgct
gcagagaaattgccgtcaatagaaagtgaagcaatgccgttgaaacgtggaagggagcaa
tcagaactcccaggtacttctcagtttaaaagacaaagaggtgaggggaggcttaatggg
agttcagacagtcagacttgctcagaggacttgtctcaggatcgccctattccccaagtg
accgaacccaagacacctgttcaggtctgtggcagcgtaatgaagacgagaagctctgca
gcaagaagcagtccttcacttccagaaactccctctactccatctactttcaaggcttgc
aatcaagcaggaataccacagagtccttctgtgttcaggtctcctggtagtaacccaatt
gccagaagaaattacaaaggggagactttactccatcttgcttccatcaagggtgactta
gcagctgttgaagagctgctgaaaaatggggcagatcccaacattaaggacaatgctggc
tggacaccactgcacgaggcatgcaaccatgggcaccaagaggtggtggagctgttgcta
caacacaaagcactggtgaattctacgggctatcagaacgattcgccacttcacgatgct
gccaagaatgggcacgtgagcattgttgagctgctgcttctgcatggtgcctcccgtgat
gcagttaatatatttggtctgcggcctgtggactatgcagagagtgaaaagatgaagtct
gtgctaatgttaccagtcaagaatgaatcattttcatttagccagctctctgagagtccg
agccagcctagagatggacctattggtatcctagggagcagtctgagttcaaagcaacag
aaattgctgagcaggctagcaacagttctgaaggctcgaaggtgtactgaatttaacagc
acagtaacccacgttgttattcctgatattccgatgccaagtactgttaaatgcatgatg
gctgtgctgactggatgttgggtcctgaagtttgagtgggtacaagcctgtctacaaagt
acagttcgagagcaagaagagaagtatgaaatccaaggtggccctcaaagaggccggctc
aacaaagaacagctgctgcctaagctgtttgatggatgctacttctattttttgggatct
ttcgctagtcaccagaagagcgatcttgtggagctggtcaaagcaggaggaggacaaatc
ctggttaggcagccgaaaccagacagcgatgtgacacagacaatcaacacggtggcatac
catgcagaatctacctctgaccagagattttgcactcagtatgtcgtctatgatgcatct
tctaaattcaaaccgaagaaaattcgccaaggcaaagtctggtttgctccctccagctgg
attgtagactgcataatgtcgtttcagctgctgcctgtaaagtga
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