Coturnix japonica (Japanese quail): 107316988
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Entry
107316988 CDS
T04297
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107316988 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107316988 (PRPF40A)
Spliceosome [BR:
cjo03041
]
Complex A
U1 snRNP components
U1 related factors
107316988 (PRPF40A)
Complex B
107316988 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
107316988
NCBI-ProteinID:
XP_015724633
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All DBs
Position
7:30421177..30438991
Genome browser
AA seq
995 aa
AA seq
DB search
MSGGDSAAAAATASPQALPFSLPKPPPLMQLTPGDAVRPVASAADQSPKGSRLTGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPTSRQPLRGRMMGRCGGGSLLSTAMRPGERSAIMM
GHPGMPHYPPMGMHPMGQRPPNMPPVPHSMMPQMMPPMGGPPMGQMPGMMQSVMPGMMMS
HMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVCAAQQTATTNSSGSEEHSKQKSTW
TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKE
SRWAKPKELEDLEALIKAEENSTKTEESASTTAAADAANTAATATAAAEAATAGTASTAA
ASETETTAASAAVENESAAAATAEEQSAESATNAADDSKQDGSADTSKKEGDDAQPVKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQL
HSMSSWMELYPTISSDIRFTNMLGQPVSSSGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSASERSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKKERERESEKDRARQRSESKHKSPTKKR
PGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggggactcagcggcggcggcggccacggcctcccctcaggcgctgccgttc
tcgctgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccggcccgtg
gcttcggccgccgaccaatcgccgaagggcagcaggctgacgggccgtcccgattggccg
gcggggaagccagtcagcctgctggccccgctgctcccgccccgcggggagcccgagccg
ctgatgccgttcgggcccacatcgcgacagccgctgagagggagaatgatggggcgctgc
ggggggggcagcctgctcagcaccgccatgagaccgggggagcgcagcgccatcatgatg
ggacacccggggatgccgcattacccgcccatgggaatgcaccctatgggtcagaggcca
ccaaacatgcccccggttccacacagcatgatgcctcagatgatgcccccaatgggagga
ccgccaatggggcagatgcctgggatgatgcagtcggtcatgcctggaatgatgatgtct
cacatgtcccaagctgctatgcagcctacggttccgccaggggtgaacagcatggatgca
caagtaggtgtaacacctcctggaactcagacaacacatcccgtggtttgtgcagctcag
caaacagccacaaccaacagttcgggcagtgaggagcactcaaaacagaaatcgacgtgg
acggagcacaaatcacctgatggaagaacctattactacaacactgaaacgaagcagtcc
acgtgggagaagccggatgatcttaaaacccctgctgagcaattgctgtctaagtgccca
tggaaagagtacaaatctgattctggaaagccatactactataattcccaaacaaaggaa
tcacgctgggcaaaacccaaagaactcgaagatctggaagcactgatcaaagctgaagaa
aacagcaccaagactgaagaatctgcttcaacaactgctgcagcagatgcagccaacact
gctgccacagccacggctgctgctgaagctgccacagctggtactgccagcactgctgca
gcctccgaaacagaaaccactgccgcctctgctgcggtggaaaacgagagtgctgctgca
gccacagctgaggaacagagtgcggaaagtgccactaacgcagctgatgactccaagcag
gacggttcagcagacacttcaaagaaggagggcgatgatgcacagccggttaaaaaaacc
tacacctggaatacaaaagaagaagcgaaacaggcatttaaagaactcctgaaagaaaag
cgggtgccatccaatgcttcttgggagcaagccatgaaaatgatcattaatgatcccaga
tacagcgctttggcgaagctgagtgaaaagaagcaggccttcaatgcttataaagttcag
acggaaaaagaagaaaaagaagaagcgagatcaaaatacaaagaagctaaagagtccttc
cagcgcttcctggaaaaccacgagaagatgacatccacgacacgatacaaaaaagctgaa
caaatgtttggggagatggaagtctggaatgcaatatctgagcgcgaccgcctggaaatt
tatgaagacgtcttgttttttctctctaagaaagaaaaggaacaagccaaacagttacga
aagaggaactgggaagctctgaagaacatcctcgataacatggcgaacgtcacttactgc
accacttggtcagaggctcagcagtatctgatggacaaccctacgtttgcagaagatgag
gaacttcagaatatggataaggaggatgcactgatctgctttgaggaacacatcagggca
ctggagaaagaggaggaagaagaaaagcagaaaagtttactgagagaaagaaggcggcag
aggaaaaacagagaatcttttcagatatttttagatgaactgcacgagcacggacagctg
cattcaatgtcctcgtggatggagctgtacccaaccatcagctctgacatcagattcacg
aatatgcttggtcagcctgtttcttcatcaggatcaacagcacttgatctcttcaagttc
tacgttgaagacttaaaagcacgttaccacgatgagaagaagatcataaaagatatctta
aaggataaagggtttgtagttgaagtgaatacttcttttgaagacttcgttacagtcatc
agctcaactaagagagccaccactttagatgcaggaaatatcaagctggctttcaacagt
ctgctggaaaaggcagaagcccgcgaaagagaaagggaaaaggaagaagctcgcaaaatg
aagcggaaagaatctgccttcaagagcatgctgaaacaagccactcctcccatcgagctg
gacgctgtctgggaagatatcagagataggtttgtgaaggagccagcgtttgaagacatc
actctggagtctgaaaggaaaagaatatttaaagatttcatgcacgtactcgagcacgag
tgtcagcatcatcattcaaagaacaagaaacactctaaaaagtccaaaaagcaccacagg
aagcggtcccgctctcgctcgggctcggagtctgaggacgatgacagccattcaaagaag
aaaaggcaacgttcagaatctagatccgcttctgagcgttcctccagcgcagaatctgag
agaagttacaagaagtcaaaaaagcacaagaaaaagagcaagaaaagaagacacaagtct
gattcaccagaatctgatattgaacgagaaaaagacaaaaaagaaagagagagagaaagt
gaaaaggatagagctagacaaagatctgagtcaaaacataaatctccgactaaaaaacga
cctggaaaagattctggcaactgggacacctcgggcagcgagctgagcgaaggggagttg
gaaaagcagaggcggactcttttggaacaactggatgaagatcaatga
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