Coturnix japonica (Japanese quail): 107317194
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Entry
107317194 CDS
T04297
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjo03000
]
107317194 (RC3H1)
04121 Ubiquitin system [BR:
cjo04121
]
107317194 (RC3H1)
Transcription factors [BR:
cjo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107317194 (RC3H1)
Ubiquitin system [BR:
cjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107317194 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
107317194
NCBI-ProteinID:
XP_015725034
LinkDB
All DBs
Position
8:complement(4525936..4578974)
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITICSGAEDTKHYEESKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSDE
GGVDLPNRKTSALPNGIVSTGSTVTQLIPRGTTDSSYEAALKPGKMDHLSSSAPGSPPDL
LEPVSKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYNTQQADIFYQDHRG
AAPPFEPAPYQQGVYYPQTMSRFVRPPPSAPEPGPPYLDHYAPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEMVRGSPVPIEIPQAAVPSYVPESRDRYPQTES
YCPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMRDQRLDMQRRAAEAGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPIQAMAVQG
ASTKSIISDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAEDLALAFS
SDVPNGSALTQENISLLSNKAASLSLSEDPEGGGDNQDSQRMGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccgcagtggacggattttctctcctgtcctatttgcacacagact
tttgatgaaacgatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcgtgcccttttgaccagaccactatcaacacagat
attgaacttcttcctgtgaactcagctttactgcagctagtgggtgctcaggttcctgag
cagcagccaattactatatgtagtggagctgaagataccaagcattacgaggagagcaaa
aaatgcgtggaagaattagcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
ctgaacagtactactcagagtgtcctgagtcgtcctatgcaaaggaagcttgtgacgctg
gttcactgccagctagtggaggaagaaggacggatcagagccatgcgtgcggcacggtca
cttggtgaaagaacagtcacagagctcattcttcagcatcaaaatcctcagcagctctct
tccaacctctgggctgcagtgagagccagagggtgccagttccttggaccagctatgcaa
gaagaggctttaaagctggttctgctggctctggaagatggatctgccttgtcacgaaag
gtcttggttctgtttgtggttcagaggctggagccacgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcgtgcttcaaggtgacgaagcgc
gatgaagattcctccctgatgcaactgaaggaggaatttcgtacttatgaagctctgaga
agggaacatgattcccagattgttcaaattgctatggaagcaggtttacgcattgcacca
gatcagtggtcctcgctgttgtatggagaccagtctcataaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcgtttgcgcagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcaccttgagctcctg
gcaaatattgatcccagcccagatgctccacctccaacatgggaacaactggaaaatggg
cttgttgctgtaaggactgtggttcacggcttagttgattatatccagaatcacagcaag
aaaggaacggatcagcaacagcctcctcagcacagcaaatacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaatttcgtaaaatgaacaagcgtctggttccaagaagacctctgagt
gcctccctgggccaactgaatgaggtgggcctgccttcaggagctatcctctcggatgaa
gggggagtggacttgcccaataggaaaacctctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaacttattcctcgagggacgactgactccagttacgaagctgct
ctgaaaccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttg
ctggaacctgtctccaagagctctatttctgccttaccagtgaaccctcatcctgtgcct
gctcgggcaccaacagatctgccttcagtgtctgtcacaaaacagttgcaaatggtacct
cgtggatctcagttgtataatactcagcaagcagatatcttttatcaagatcatagggga
gctgccccaccatttgagccagcaccctaccagcaaggagtttactatcctcaaaccatg
tctcgctttgtgcgacctcctccatcagctccagaacctggtccaccttatttagaccat
tacgctccctaccttcaggatcgtgtggtgagcccccagtacacacagcctcagcaatat
cctccgatgggacaacccatatatcccccgcactacgacagccgccgtgtgtacccccct
gtccagccatatcagcgagaggagatggtccgaggaagccctgtacccattgaaattcca
caagcagctgtaccctcctacgtacctgaatccagggacagatacccacaaacagagagt
tattgcccagtggctccccatctcagtcagatcagaccttcctgccaccggcctcacccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcacagttagaggagaggaag
gttatttccccacctccttttgcaccttctccaaccttgcctcatccttttcattcagag
gagatctttgtttttgtacagtacttagatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgtcgtggcagcaaggagtgtggagatggcgaacgtg
gatagtaaagccatgcgtgaccaacgattagacatgcagagaagagcagcagaggctggt
gatgatgacctcattccgtttggagaccgaccaactgtgtcgagatttggggccatctct
cgtacttccaaagcgatgtaccagaattctggtcccattcaggccatggcggttcaggga
gcttccaccaaatcaatcatttcagactacagtccttatggaactcatggaggctgggga
ggctctccatattctccccatcaaaatataccttctcagggacgtttcaatgacagggag
agactgtccatgtcagatgtggctggtcatggaaaacagttgccctcagctgagcgagag
caacagctgcgcatggagctgcagcaagtggaccatcagatcagccagcagacacaaatg
agaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgggagctgagc
atggaaagccagtcttcactggatattaaaaacaaactgggcaccactaaacagacagaa
aatggacaattagaaccacaaagcaaggttccagctgaggacctcgcactggcattcagc
agcgatgttccaaatggatcagccttgacacaagaaaacatcagcctcctgtcaaacaag
gcagcatctctcagcctgtccgaggacccggagggaggaggagacaaccaagactcccag
agaatgggtgttacacccacatctgctccatga
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integrated database retrieval system
