Coturnix japonica (Japanese quail): 107319079
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Entry
107319079 CDS
T04297
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjo03036
]
107319079 (CHD9)
Chromosome and associated proteins [BR:
cjo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
107319079 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
CHDCT2
Motif
Other DBs
NCBI-GeneID:
107319079
NCBI-ProteinID:
XP_015729106
LinkDB
All DBs
Position
11:complement(4028040..4105788)
Genome browser
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAP
NQQKLSDFEQLNQYDSLKLHQVNQSFNSSTDNVLSPHSQFNCSPIHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRSNTGQDALSQPKDFMEVNVSTSHRVSVNHPPPVSNPSTSQQPLSVQPFSQSASASLHF
CGNQEGTFGGQSPTITPCSVNNSQQFSSPYSYSNNHISPTSLLQSTTALSSSQQTHPISD
FTGSDAFTSQMGTKQDTAEHMLNANTALNSNSFQMLHSSHPQGNFSSSKLSPVSISFPAS
AGSASQISHFTDPIESNGFTSLDDNLLHQVDASNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEDHITPHSVTQSSDIVRAQSQTQIHPWHSSVSSQHLQDRSRVTFQGQP
PSSKKTDGSGSHTKSQNTQVRAMSEKKQRKKADSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKAKIGKLIITLGK
KQKRKNESSDELSDAKQTPQKLSKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEDAKASAK
VKKNPAPLPAEQPLQLFVENPSEEDAAIVDKILSSRIIKKEISAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPTAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGEEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWRDILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGSEIQKVFDGTDASEIDVWVPEPDHAEVPADWWDKEADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYIDGDVEDPEYKPAPAL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPVQTSMMQPPYEEVALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYSQNKVALSRTSTPLLHQYQMALAASPLTPQSRLPDAKVNTLE
DTKVKNENRKEDAQSSEEESMSTEETQTVLKSEPLSPKNGTPVQNTEHKPSVKIETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESVA
SLSTTHDETQDSFQMNNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRNYDSNTVASFYTTKLLDSPGAATDYSEPSAPTPPLAGVKEEYDQSPQMSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRDLQNASETSLVNFP
KSLPESGTSSHLAASANGVIVDSQPVLKKRRGRRKNVEGVDVLFINRNKQPNHVNPGINS
CHIAAGINPALNYTQSQGVLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DLGACIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEIVKQSGFLPEVMFDRILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAATAASVSVNPLLTNGLLPGVDLSSLQALQQNLQNLQSLQVTAGLIGMPAGLTTG
GEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEDKKGSDLKEVDIKKERTEDQN
TDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFD
VQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattaaat
ttaggtgcagaatttgaacctttgcacatagactctttgaatcatgtgcaggatgctccg
aatcaacaaaagttgagtgactttgaacagctgaatcaatatgattccctgaaacttcac
caagtgaatcagtcttttaatagctcgacagacaacgtcttatcaccacactctcagttc
aattgttcaccaattcatccgcaaaatcagtctaatgggatgtttccagacgtggccgat
ggaagccctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcactacgatcgcaacaa
agcaggagcaacacggggcaagatgctctgagtcagccaaaagacttcatggaagttaac
gtatctacttctcacagagtcagtgttaaccacccacctccagtttctaatccttcaact
tcacagcagcctctgtctgttcagccgttttctcaatctgcaagtgcttcgttacatttt
tgtgggaatcaagaaggaacttttggtggacagtccccaacgattactccgtgttctgtc
aataatagccaacaattttcatctccttattcttactctaataaccacatttctcctacc
agccttcttcagtctaccacagctctttctagtagccagcagacacatccaatctctgat
ttcactggaagcgatgcctttacatctcaaatggggaccaagcaagacacagctgagcac
atgttaaatgctaacacagctttgaattcaaatagttttcagatgttgcattcttcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgagtattagttttccagcttct
gctggttctgcttctcagataagccatttcactgaccctattgagagcaatggttttaca
tctttggatgataacttacttcatcaagttgacgcttcgaatgaaccatttacaggactt
gacccggatgacctccttcaggaagaccttctgccacagtttgatgattctgcatttgtt
caggatagcacaagccatgttttagagcatgacctagaagaccacataaccccacattcg
gtaacacagtcatctgatattgttcgggcacagtctcaaactcagatccatccttggcat
tcttcagtttctagtcagcatctgcaagacagaagtcgtgtaacctttcaaggacagcct
ccttcctccaagaagactgatggttcaggatcacatactaagtcacagaatacccaggtg
agggcaatgtctgaaaagaagcagaggaaaaaagcagactctgaaagtaaacaagagaag
gcaaatcgcataatatctgaagcaattgcaaaagcaaaagagagaggagagagaaacatc
ccacgggtaatgagtccagaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aaaggtagaaaagttaaatcgaaacccaaggacaaggagagcaaaaagccaaaaactggt
tcctcatccaaaacaaaagagaaagcaaaaattggaaagctaatcatcacactgggtaag
aaacagaaaagaaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacag
aagctatcgaaagatgaagattcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aagtatgctgaagaaggagaaggaaagcaatcagaagaagatgctaaagcttctgcaaaa
gtcaaaaagaatcctgctcctttacctgctgagcagcctttacaattatttgtggaaaat
ccaagtgaggaagatgcagcaattgtagacaaaatcttatcctctaggataataaagaaa
gaaatatctgctgggatgacagtagaaacagaagaatttttcgtaaaatacaagaactac
tcttatctccactgtgagtgggccacagaacagcagcttttaaaggataaaagaatccag
cagaaaataaaacggttcaaactaaggcaagcacaaagagctcacttttttgcagatatg
gaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtctctctt
tgtgaagataaagacactggtgagcctgttgtttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagactggaccgaccacctccaaac
tcatggaagaagatagaacactcgagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggcttctgttcaactggtacaatagacgaaattgcatttta
gcggatgaaatgggtcttggcaaaaccattcagtcaattacattcctctatgaaatcctc
ctgtctggtataagaggaccttttctgatcatagctccactttccactataacaaactgg
gaaagagaatttcgcacatggactgaccttaatgttgtggtgtaccatggaagtatgatc
agcaggcagatgattcagcaatatgaaatgtacttcagggactcccagggacgtatcgtt
cgaggtacctatagattccaagccattatcacaacttttgaaatgattcttggtggctgt
ccagagctaaatgcaattgaatggcgatgtgttattattgatgaagcacacagactgaaa
aacagaaactgcaaactgttagaaggactaaaattaatgaacctcgaacataaagtgctg
ttaactggtacgccactgcagaacacggtagaagagttatttagtcttcttcattttctt
gaaccattgcgttttcctgctgaatcaacgttcatgcaagaatttggagaccttaaaaca
gaagaacaggttcagaaattacaagctatcttgaaacccatgatgctcaggcgattaaag
gaagatgtagaaaaaaagctggctcctaaggaagaaacaataattgaagtagaactaact
aatattcagaagaaatactatcgagcaatcttggagaaaaactttgctttcttatctaaa
ggagctgggcaagcaaacgtaccaaatttggttaacactatgatggaactaaggaaatgc
tgcaatcatccttatctcatcaaaggtgctgaagagaaaatccttggagaatttaaagaa
acttacagcccaactgctccagacttccatctacaagcaatgatccagtctgctggtaaa
ttggttcttattgataaacttcttccaaaaatgaaagcaggaggccacaaggtccttatt
ttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaagatac
ttatatgaacgaattgatggacgagtacgtggcaacctcaggcaagctgcaattgaccgg
ttcagcaaaccagattctgatcgctttgtgttccttctgtgcaccagagctggtggtttg
gggattaatttgactgcagcagatacatgtataatttttgattcagactggaatcctcaa
aatgatctgcaggctcaagcccgttgtcacaggattggacagaacaaagcggtgaaggtc
tacagactgataactcgtaactcatatgaaagagagatgtttgacagagcaagtctgaag
ctgggactggataaggctgtcttacagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctctaaaaaagaaatagaagacttgcttcgaaggggtgcatatggcgcc
attatggatgaagaagatgagggctccaaattctgtgaggaagacattgaccaaattttg
cagcggcgtaccaaaactatcacaattgaatcagaaggaaggggctccacatttgccaag
gctagctttgttgcatctggaaacagaactgacatttccttagatgaccccaacttctgg
cagaagtgggccaaaaaagcagaaatagatatagatgctatcagtggccgaaacagcctg
gttattgataccccacgaatcagaaaacaaacaaggcccttcagcgctacaaaagatgag
ctggctgaattgtctgaagtggagagcgagggggaggagaagcccaaactccgcagacct
tgtgaccgttccaatggatacggaaggacggagtgctttcgggtggagaaaaacttactg
gtctatgggtggggtcgatggagagacattttatcacatggtcgcttcaagagacagcta
aacgaacaagatgtggagataatttgtcgagctcttttagcctactgtcttgttcactac
agaggggacgagaaaataaaaagttttatatgggatctcattactccaacagaagatggg
caaacacgagagttgcagaatcatcttggcctgtcagcccctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggcttcga
aaatacaatccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacatcac
tgcaacaaggtcttgcttcgagtaagaatgctgtattacttaaaacaagaagttattggt
agtgaaattcaaaaagtgtttgatggaactgatgccagtgaaattgatgtttgggtccct
gagccagatcacgctgaagttcctgcagactggtgggataaggaggcagataaatccctt
ctaattggagtttttaaacatggttatgaaaaatacaacacgatcagagcagacccagcg
ctgtgcttcttggaaagggttggcaagccagatgataaagcagttgctgctgagcagaga
gcaaatgattatattgatggggatgtcgaagatccagaatataaaccagcaccagcattg
tttaaagatgacatagaggatgatgtttcatccccaggtgatctagtaatagcagatgga
gatgggcaaatgatggaaggtgacaaaatctattggccaactcagtctgccttaacaaca
cgtcttcgccgcctaataacagcttatcaaagaacaagtaaaaataggcaggcccagcag
atccagccagcattcccagtacaaactagtatgatgcagcctccatatgaagaagttgct
ctaaatccaaagatggctgctaaaatagaaagacagcaaaggtggacaagaagggaagaa
gctgacttctacagagttgtgtccacatttggagtggtatttgatcctgaacggggacgg
tttgattggaccaaattcagagctatggctaggctgcataagaaaactgatgagagctta
gagaaatacctgtatgcattcatgtcaatgtgcaggagagtctgtcgtctcccctcaaaa
gaagaactggtagacccaaacatttttatccaaccaattacagaggaacgtgcctctcgg
actttgtatcgcattgagcttctaaggaaggtgcgagaacaggctcttagacatccacag
ttgtttgaacgactaaagctatgtcagccaaacccagatttacctgtctggtgggaatgt
gggactcatgacagggatttacttattggagctgctaaacatggggttagcaggacagat
tatcatattcttcgtgatcctgaactctcatttatgtctgcccagaggaactatagtcag
aacaaagtagcactgtcaaggacttctactccgctcttgcatcagtatcagatggcatta
gctgcttctcctcttacacctcagtcaagattgccagatgctaaagtgaatactcttgag
gacacgaaagttaaaaatgaaaatcggaaagaggatgctcagtcgtctgaagaggaatct
atgtctacagaggagacgcagacagtactgaaatctgagcctctgagtccaaaaaatggc
acaccagtacaaaatacagaacacaaacctagtgtgaagattgaaacagacaggcgcatg
gttgcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagaggatcagactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcttcttcatcctcttcatcttcctcatcttgttcacactctcgatcaggc
tctagttcttcatcatcttcatcttcatcttcatcatcttcatcatcttcatcttcatca
tcatcatcgtcgtcgtcatcatcgtcatcgtctgaagagagtgatagtgatgaagaggag
gcgcaaaaacgtgcagaaggaacccctcatataaaagcatatgatgaagagagtgtagct
tctctgagtacaacacacgatgagacgcaggacagcttccagatgaataacgggacacca
aattccagttatctcctacaaggtggatacatgttggctgcatcttattggccaaaggat
cgagttatgattaaccggcttgatagtatttgtcaaacagtgttgaagggtaaatggcct
tcagcaagaaggaactatgacagcaatacagtggcatctttctacacaaccaaacttctg
gatagtccaggcgcagctacagattacagtgagcccagtgcaccaacaccccctcttgca
ggtgttaaagaagaatatgatcagtcgccacagatgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccatttgaaagcgaggaaggtgcactgggacagcagcaa
tacctggctcggctacgtgatctccagaatgcttcagaaaccagccttgtcaacttccca
aaatctcttcctgaatcaggtacttccagtcacttagcagccagcgccaatggagtgata
gttgatagtcagccggtactcaaaaagagaagagggagaaggaagaacgtggaaggagtc
gatgtcctctttataaacagaaataagcagcccaatcatgtaaatccaggaattaactcg
tgccacattgctgccggaataaacccagcactcaattacacgcagtctcaaggcgtgctt
gatgcagagagtccagttcctgttattaacctaaaagatgggacgaggctggcaggtgac
gatgcccccaaaaggaaagatttagaaaggtggctgaaggaacatcctggctatgttgaa
gatttaggagcttgtattcctaggatgcaactgcatgaagggaggcccaaacaaaaacga
caccgttgtcgaaaccctaataaactagatgttaatagtttgactggtgaagaacgtgtc
cagctcataaacagaagaaatgcaagaaaggtggggggtgcgtttgctccccctctgaag
gatttgtgcaggttcttgaaagaaaatccagagtatggagtggctcctgaatggggagaa
attgtaaagcagtctggatttcttccagaagttatgtttgaccgtattctcaccgggcct
gttgtacgggaagaagtcagccggaggggaaggcgccccaaaagtgagattgctaaggca
acagcggctgcggctgctgccactgctgcaagtgtatcagtgaaccctctgctcaccaac
ggattgctcccgggagtggatctgtccagtcttcaggccttacaacaaaacctgcaaaac
ctgcagtcgctgcaagtaacggcagggttgattggaatgccagctggcttaactactgga
ggagaagcgaagaacatggctgccatgttccccatgctgctgtcagggatggctggatta
ccaaacttgctgggcatgggaggacttctgacaaagtctacggaatctatttcagaggat
aaaaagggaagtgatttgaaagaggtggatataaagaaagaaaggacagaagaccaaaat
acggatactggtggtgaaaactctgtttcaagctctccttcaacatcctctgctgctgca
gctgccaatcctctctctcttaacccattacttttgtccaacatactttatccagggatg
cttctcactccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgat
gtacagaacagtgaaagtaatgacacgggctcagccaagcctacagaagaaaaggaggaa
aattctcgggttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaa
aacagcacagatgaaggttcagagaaagcagatgcttcatctggatctgatagtacatcg
tcttcatccgaggattcagattctagtgatgaagactga
DBGET
integrated database retrieval system
