Coturnix japonica (Japanese quail): 107319449
Help
Entry
107319449 CDS
T04297
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107319449 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107319449 (DHX38)
Enzymes [BR:
cjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107319449 (DHX38)
Spliceosome [BR:
cjo03041
]
Complex C
Other components
Step II factors
107319449 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
AAA_16
AAA_30
AAA_7
DUF6449
Motif
Other DBs
NCBI-GeneID:
107319449
NCBI-ProteinID:
XP_015729728
LinkDB
All DBs
Position
11:complement(17613660..17624494)
Genome browser
AA seq
1224 aa
AA seq
DB search
MAEASLHRLAGTGPAAEAGGLVARGTTEQHVFKAPAPRVSLLGLDLLAAQKRREREEHGT
GGKRSRVASYRDWEDGHDEAGSNDEDEDEDKERSGRGARGTRHYRSVHVETPSYTGGVSE
EFWERSRQRERERREHGVFASSKEKERKKEHSRDRGHDRKRDREDWDRSRHSSRSERDGS
VERNSRRSEPESPKHRPKDAATPSRSSWEEDDSGCSSSRRSQWESPSPTPSYRDSERSHR
ASRDTDRRDRDRSVRSKYSDKTPLPTPSYKYNEWADDRKHLGSTPRLSRGRGRREDGEEG
IAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSDEYVKKREQHLHKQKQKRI
SAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFLDGRIVF
TKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGDIMGIKK
EEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEARSEFAKKKSILEQRQYLPIFAVQQELLS
ILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGV
RLGEEVGYAIRFEDCTSESTIIKYMTDGILLRESLREADLDNYSAIIMDEAHERSLNTDV
LFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDY
VEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPIYSQLP
SDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIY
PISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGV
QDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSC
DMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQWKNNNY
STLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYFHQAAK
LKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAE
LGPMFYSIKHAGKSRQENRRRAKEEASAMEEEMALAEEQLRARREEQERRNPLGSSRCTK
IYTPGRKEQGEPLTPRRTPARFGL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcgtcgctgcaccgcctggccgggaccggccccgctgctgaggcgggcggg
ctggtggcgcgcggcaccaccgagcagcacgtgttcaaagcgccggcaccgcgagtgtcg
ctgctggggctggatctgctggcggcacagaaacggagagagcgcgaggagcacgggacc
ggcgggaaacggtcacgggtggcgtcgtaccgggactgggaggacgggcacgacgaggcg
gggagcaacgacgaggacgaggacgaggacaaggagcggagcgggcggggcgcccgcggg
accaggcattaccgctccgtccatgtggaaacaccttcctacacgggtggtgtcagtgag
gagttttgggagcgcagccggcagcgggaaagagagcgccgtgaacatggggtgtttgcc
tcctccaaggagaaggaacgcaagaaggagcacagcagggatcgaggccacgatcgtaaa
cgagaccgtgaggactgggacagaagtcgtcacagtagtagatcagaaagagatggctca
gtggagcggaacagcaggaggagtgaaccagagagtcccaagcatcgtcccaaagatgca
gccacaccgtctcgctccagctgggaggaggatgatagtggttgcagcagttcccgccgc
tcgcagtgggagtctccttctcccacaccttcctatcgagactcagagcgcagccaccgg
gcgtcacgggacacagatcggagagaccgggacaggtctgtaaggagcaagtattcagat
aagacaccattgcccaccccgtcctacaaatataatgagtgggctgatgaccggaaacac
ctggggtccacaccacgactgtccagaggtagagggcggcgtgaggacggggaggagggc
attgcctttgaaacagaagaggagcgtcagcagtgggaggacgaccaacggcaagcagac
cgggactggtatatgatggatgaaggctacgatgagtttcacaatcccttggcctactcc
tctgacgagtatgtgaaaaagcgggagcaacacttgcacaagcaaaagcagaagcgtatc
tctgcacagcggcggcagatcaacgaggataacgagcgttgggagacaaatcgcatgctg
accagtggtgtggttcatcggattgaagtggatgaagattttgaagaggataactcagcc
aaagtgcatctgctggtgcataacctggtgcctcctttcctagatgggaggatagtcttc
acaaaacagccagagccagtcatccctgtaaaggatgccacttctgacttggccatcata
gcccgaaagggcagccagttggtgcgcaagcacagggagcaaaaggagcgtaaaagggct
cagcataaacactgggagctggcaggcacaaaactgggagacattatggggatcaagaag
gaagaggagaaggatgagatggtgacagaagatggcaaagtagattacaagacagagcag
aagtttgctgaacacatgaaagaaaaaagtgaagcaaggagtgagtttgccaagaagaag
tcgattctggagcagagacaatatctgcccatctttgctgtgcagcaggagctgctttcc
atcctcagggacaacagcattgtgattgtggtaggggagacagggagcggtaaaacaact
cagctgacgcagtacctccatgaggatggctacacagactatggcatgattggctgcacg
cagccccgcagagtggcagccatgtcggttgccaagcgggtcagtgaagagatgggagtg
cgtctgggagaggaggtgggttatgccatccgctttgaagactgcacgtcagagagcacg
ataatcaaatacatgacagatgggatcctccttcgtgagtcgctgagagaggctgacttg
gacaactacagtgctatcatcatggatgaggcacacgagcgctcgctcaatactgatgtg
ctctttggcctgcttcgggaggtggtagcacgtcgctctgatctgaagctcgttgtcacc
tctgccaccatggatgctgataaatttgcctctttttttgggaatgttcccattttccac
attcctgggcgcacctttcctgttgatattcttttcagcaagacaccgcaagaggattat
gtggaggctgcagtgaaacaagctctgcaggtccatttgtctggtgctcctggggacatc
cttgtcttcatgcctggtcaggaggatattgaggtcacttcagaacaaattgtggagcac
cttgaggagctggaaaaggcacctgcacttgctgtactgcctatctattctcagctgcca
tcagacttacaggccaagatcttccagaaggctccagatggggtcagaaagtgcattgtt
gccactaacattgcagagacctcgctgacagttgatggtatcatgtttgttattgactct
ggatactgcaagttgaaggttttcaatccccgtataggcatggatgcactgcagatctac
cccatcagtcaagccaatgccaatcagagagctggccgagctggccgaacaggcccgggt
cactgcttcaggctctacacccagagcgcctacaagaatgagctgctgacaaccacagtg
cctgagatccagcgcaccaacctcgccaatgtagtgcttctgctcaaatctctgggtgtc
caggacctgctgcagttccacttcatggatccaccccctgaggacaacatgctcaactcc
atgtaccagttgtggattctgggggccctggataacacaggtggcctgacctctacagga
cgtctgatggtggagttcccattggatcctgcactctccaaaatgctcattgtttcatgt
gacatgggttgcagctctgagatattgctcattgtgtccatgttgtctgtgcctgccatc
ttttatcggcctaagggccgagaggaagagagtgaccaagtgcgggagaaatttgctgtt
ccagagagtgatcatttaacttacctgaatgtttacctgcaatggaagaacaacaactac
tctactctgtggtgcaaccagcacttcattcatgccaaggccatgcggaaggtgcgggag
gtgcgtgcccagctcaaggacattatggtgcagcagcgcatgagcctggcatcctgtggt
actgactgggatgtggtcaggaagtgtatctgtgccgcatatttccatcaagctgcaaag
ctgaaaggcattggagagtatgtcaatatccgtacaggaatgccttgccacctgcacccc
accagctccctctttggcatgggctacactccagattacattgtatatcatgaactggtc
atgaccaccaaggaatacatgcagtgtgtcactgctgtggatggagagtggctggcagag
ttgggccccatgttctatagtatcaagcatgctggcaagtcacgtcaggagaaccgccga
cgtgcaaaggaggaagcatctgcaatggaggaagagatggctctggctgaggagcagctg
cgtgcccgcagggaggagcaggagcgccgtaacccattgggcagttcaagatgtactaaa
atctatacacctggacggaaggagcagggggagcccctgacgccacgacgtaccccagcc
cgctttggtctctga
DBGET
integrated database retrieval system
