Coturnix japonica (Japanese quail): 107320526
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Entry
107320526 CDS
T04297
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X3
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107320526 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107320526 (PARN)
Enzymes [BR:
cjo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107320526 (PARN)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107320526 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
107320526
NCBI-ProteinID:
XP_015731936
UniProt:
A0A8C2TR28
LinkDB
All DBs
Position
14:complement(829751..864086)
Genome browser
AA seq
635 aa
AA seq
DB search
MEVIRSNFKDNLSKVYEAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQKKF
IDKIVKQIDEFLKNEDKESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERYII
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLQGPDLQPKRDNVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRAKRKCTEDSWKEMERKRLK
TQGAPYITQSQYYCVNSFTGTSIMGKRSMSPIQEETGSDSLEEEEVPENQTNSCAESPPD
VKKKVKRLKKIKREEVSAGSLTSNSTEIFEVPETW
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataacctgagcaaagtgtacgaagctgtcgag
gaagcggacttcctggccattgacggggagttctcagggatcagcgacgggccttctgtt
agtgcattaaccaatggctttgacacaccagaagaacggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacacagaa
gagaagtatattatgaaatcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccatacttaaatcaggaagaggaaaga
caactaagggaacagtatgatgaaaagcgttctcaggccaatggtgcaggatctctctcc
tatatttctcctaatgccacaaaatgtcctgttgcgattcctgaagatcagaaaaaattc
attgataaaatagtgaaacaaatagatgaatttttaaagaatgaagacaaggaaagtctg
gaactggagccatgtacagggtttcagaggaaattaatttaccagaccttgagctggaag
tatccaaaaggtatccacgttgaaaccctagagacagataagaaggagagatatattatt
attagtaaggtagatgaagaagaacggaaaagaagagaacaacagaaacaagcaaaggaa
caggaagaactgaatgatgcagtaggattttccagagttgttcatgctattgcaaattct
ggcaaacttgttattgggcacaatatgcttctagatgttatgcatactatacaccagttc
tattgtcctctacctgatgacctaagtgaattcaaagaagtgacgtcatgtgtgtttccc
cggctattggatactaaactgatggcaagtacacaaccttttaaggacatcattaataat
acgtcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaagggtttccaagttacgacacggcttctgaacaacttcatgaagcgggt
tatgatgcttacattactggactgtgcttcatctccatggctaactatctaggttcgttt
cttagtcctccaaaaaatcacgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctgaatttgcaaggacctgacttg
cagccaaaacgagataatgttcttcatgtcacttttcccaaagagtggaagactagtgac
ctttaccagctttttagtgcctttggtaacattcaggtttcatggattgatgatacatca
gcctttgtatcgttgagccagccagaacaagtacaaatagctgtaaacaccagcagatac
gctgaaagttacaggatccagacatacgcagaatatgttgagaaaaaacatgaagaaaag
cgagcaaagagaaaatgtacggaagatagttggaaggagatggagagaaaacggttgaaa
actcaaggtgcaccgtacattacccagagtcaatactattgtgttaacagttttacaggt
accagtataatgggaaagagaagtatgagtcctattcaggaagaaactggttctgacagt
ttggaagaagaagaggttccagaaaatcagacaaactcctgtgcggagtctcctccagat
gttaagaagaaagtcaaaaggttaaaaaaaatcaagagagaagaagtttcagcaggaagc
ctcacaagtaattccactgaaatttttgaagtccctgaaacatggtag
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