Coturnix japonica (Japanese quail): 107325348
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Entry
107325348 CDS
T04297
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03013
Nucleocytoplasmic transport
cjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107325348 (UPF1)
03015 mRNA surveillance pathway
107325348 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107325348 (UPF1)
Enzymes [BR:
cjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107325348 (UPF1)
5.6.2.5 RNA 5'-3' helicase
107325348 (UPF1)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107325348 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107325348 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107325348
NCBI-ProteinID:
XP_015741577
LinkDB
All DBs
Position
28:complement(2796699..2815393)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGAGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacggccccagctcgcagaccctcaccttcctggatacggaggag
gccgagctgctcggtgccgacactcaaggatccgagttcgaattcaccgacttcaccctc
cccagccaaactcaaaccccgcccggagccgggcaggcggggcccggccaggcccaagga
gctccgggagcggggcagggccctgcaggccccatcgaggcccaggttaatggacctgat
ggcattctgcagaatggagcagtggatgataatgtagctaaaaccagccagcttctggca
gagctgaattttgaagaagatgaagaagatacttactatacaaaggatcttcccgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcctg
gaatgttacaactgcggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtaaagattccatctgagcaggaacagctgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatccgcaacccttgaggacttagaa
aagcctggtgttgatgaagagccacagcatgtcctgcttagatacgaagatgcttatcag
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggccccattgtggaaaggaattggccatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcccctgtggaggttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcggtgtca
ggatacatctatcacaaactgttaggccatgaggtggaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaa
acagtgacatcagctaccattgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccgagtaacatagctgtagatcagctgacagagaagatccatcagactggt
ctgaaagtggttcggctgtgtgctaaaagccgtgaggcaattgactcacctgtatccttc
ttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcaa
caactcaaagatgaaactggagaactgtcatctgctgatgagaaacgctaccgtgcactg
aaacgaacagcagagcgtgaattgctcatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagtttcgctccattctgatcgatgagagc
acccaagccactgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttatt
ctcgtaggtgaccattgccagcttggtcctgttgtgatgtgtaagaaagctgcaaaggca
ggcctgtctcagtccctgtttgagaggctggtagtgctggggattcgtcccatccgcctg
caggtgcagtaccgcatgcaccctgccctgagtgctttcccatccaacatcttctatgag
ggctcgctccagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgatttccag
tggccgcagccagataagccaatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacctcttacctgaacagaacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaacctgatcagattggcattattactccttatgaaggc
cagcgatcctatctggtgcagtacatgcagttcagtggttccttgcatacgaaactttac
caggaagtagaaattgcaagcgtggatgccttccaaggacgagagaaggactttattatc
ctgtcatgtgtgagagccaacgaacaccaagggataggatttctgaatgaccccaggcgt
cttaatgtggctcttacaagagcaaggtatggggtaattattgttgggaacccaaaagct
ctgtctaaacaaccgctttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggagagcctcatgcaattcagcaagccccgaaaa
cttgtcaatactatcaacccaggtgcccgtttcatgaccactgccatgtatgatgcacgt
gaagctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagcgcaggccccagccacgtcactgct
atgaacattcctatccccttcaacctcgtgatgcccccaatgccacctccggggtacttt
gggcaggccaacggcccggctgcaggacgtggggcacccaaagggaagactggacgtggt
gggcgccagaaaaatcgatttgggattcctggagcgagtcagtcaaaccttcccaatagc
caggcgagccaagacgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatctcagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagttcaagtctcagattgacgtggcgctgtcacaggac
tccacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
