Coturnix japonica (Japanese quail): 107325444
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Entry
107325444 CDS
T04297
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X3
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107325444 (PTBP1)
03041 Spliceosome [BR:
cjo03041
]
107325444 (PTBP1)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
107325444 (PTBP1)
Spliceosome [BR:
cjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107325444 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
107325444
NCBI-ProteinID:
XP_015741803
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All DBs
Position
28:1883460..1908012
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AA seq
560 aa
AA seq
DB search
MDGIVQDITVGTKRGSDELFSTCVTNGPFIMSSNASSAANGNDSKKFKGDSRSAGVPSRV
IHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTTVTPV
LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALPAPAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPPLDQTMAAAFGAP
GIIPASPYAGAGFPPTFAIPQAAGTVLRLTVQNVHGALAPLAIPAAAAAAAAGRIAIPGL
AGAGHSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILYNKKENALVQMADGNQAQLAM
SHLNGQKLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP
PSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDL
HNHDLGENHHLRVSFSKSTI
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtccaagatataacagttggtacaaagcggggatctgacgagcttttc
tctacttgtgttactaacggaccctttatcatgagcagcaacgcttcttctgcagctaat
ggaaacgacagcaaaaaattcaaaggggacagcagaagtgctggggtcccatccagagta
atccacgttcgtaagctccccagtgacgtcacggaggctgaggtcatctctctgggctta
ccttttggcaaggtcaccaaccttctgatgttgaaagggaaaaaccaggcttttatagaa
atgaatacagaggaggcagccaacaccatggtaaactactacaccacagtcactccagtc
cttcgaagccagcccatctacatccagttctccaaccacaaggagcttaagacagacaac
tcaccaaaccaagcacgtgcccaagcagctctgcaagcagtgaattcagttcagtcagga
aacctagcactgccagcccctgctgcagctgtggatgcgggaatggcaatggctggccag
agccctgtgctgaggatcattgtggagaatctcttctatcctgtcactctagatgttctt
catcagattttttccaaatttggtacagtcttgaaaataattacattcacgaagaacaac
caatttcaggctctgttacaatatgctgaccccatgagtgctcagcatgccaaactgtct
ctggatggacaaaatatctacaatgcctgttgtacgctgcgcatagatttctcaaagctc
acaagtctcaatgtcaaatataataatgataaaagcagagattacacacgaccagaccta
ccttctggggataaccagccccctcttgatcagaccatggcagctgcttttggtgcccca
ggaataatccctgcctctccatatgcaggagctggctttcctcccacctttgcaattcct
caggctgcaggtactgtacttcgcttgacagttcaaaatgttcatggagcactagctcct
ttggctatcccagcagcagctgcagcggctgcagcaggacggattgccattcccggcctc
gctggggcagggcactctgttctgctggttagcaatctgaatcctgagagagttacaccc
caatgcctctttattcttttcggagtctatggtgatgtgcagcgtgtgaagattttatat
aataagaaagagaatgctctggttcagatggctgatggaaaccaggctcagcttgccatg
agccatttgaatggacagaagctccatgggaagccaatccgtataacgttgtccaaacat
cagacagtacagctccctcgtgaggggcaagaggaccaaggtctgactaaggactatgga
aattctcctttacaccgtttcaagaaaccaggctccaaaaacttccagaacatcttccct
ccttctgccactcttcatctgtccaacattccgccttcaatagctgaagaggacctcaag
atgctgttctcaagcaatggtgggatggtcaaaggcttcaaattcttccagaaggaccgt
aaaatggctctgatccagatgggctccgtggaagaagccattcaatcactcattgacctc
cacaatcatgacctgggtgagaatcaccacctgcgtgtgtccttctccaagtcgaccatt
taa
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