Campylobacter jejuni subsp. jejuni PT14: A911_05250
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Entry
A911_05250 CDS
T02264
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cjp
Campylobacter jejuni subsp. jejuni PT14
Pathway
cjp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A911_05250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjp03400
]
A911_05250
Enzymes [BR:
cjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A911_05250
DNA repair and recombination proteins [BR:
cjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A911_05250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
Josephin
Motif
Other DBs
NCBI-ProteinID:
AFU43137
LinkDB
All DBs
Position
complement(1015988..1018924)
Genome browser
AA seq
978 aa
AA seq
DB search
MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLPDFRAQFGDDLRAFSKE
LFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHIDKKQNFDLKCFEDEISRL
GYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELE
HFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFNYLELDFLACEKF
DINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELED
TQNIHFVKSDLRLNLISHEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKF
LGLEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
KEKLKTKLLAIASEIVIMAAKRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEIL
QDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRF
DPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFG
VKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD
ALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFL
IEDKNAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLEDELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEV
YEIEGEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAK
SKDDDDILEAILTHLRKA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattttatgaatacttacaaaatccaaaaatttgtgaactttttctttgt
aaagatgaaaaacaagcagatttactcgctcaagtttcacgatttaagggtttaaaaacc
tttgttttacctgattttagagcgcagtttggagatgatttaagggctttttctaaagaa
ctttttgatctttgtaagattttaaatgcttatcataaagaagaagaaaaaaaaatcctt
atttctcctttaaatactgttttaaaaaaacttccttcaaaaaaacatttgcaaaattat
catatcgataaaaaacaaaattttgatttgaaatgttttgaagatgaaatttcaagattg
ggatacgaatttgtagatatagttcaggataaaggtgaaatttcaattcgtgcggatatt
attgatattttttgcatcaatgaagaaaatcctattagaattttgctttttggcgaagag
attgaaagtataagatattttgatttgcaaagtcaaaagtctattcctaacgaactagaa
cattttgaaatttgtccttttttaaaatattttgacaaagaaaattatgaaatttttaag
gacaaattagaagattttcaaagtgatactttaatacatgatatcaattctttagggttt
tggtgtattgatgatttttttaattatttagaacttgattttttagcttgtgaaaagttt
gatattaacgaatatgaaaaagatataagttttgtgaatgcaaaaattttacctcaagct
aaaaaatttaaagaattgcaaagttcttacaataaagatttttttgaatttcataaaaat
aaaaaaatcacacttttagctaaaaacgaagctttgtttaaagctttggagcttgaagat
actcaaaatattcattttgtaaaaagtgatttaaggcttaatcttattagtcatgaagag
ctaatcatttctttaaatcaaaaagaaaaacaaaaaacaagaaaaaaagctagtttgatt
atagatgagcttaaaaatggggattatatagtacacgaagattatggggtaggtaaattt
ttaggtcttgagatgatagtgataagcggagcaaaaaaagagtttgttgctatagagtat
caaaattctgataagcttttattaccagtggaaaatctttatttaattgataaatatttg
ggcgtgagtggatctattccaagtttagataaactaggtaaaacaagctttattaaactt
aaagaaaaattaaagactaaacttttagccatagcttctgaaattgttattatggcggct
aaaagatctttggtgcaagcaaaaaaaattacagtggatttaaatagacagactgatttt
atagctagtgcgggttttatttatacaagcgatcaagataaagcctgtcatgaaattttg
caagattttcaaagtggaaaagtcatggataggcttttaagcggtgatgtgggttttgga
aaaacagaagtcgctatgaatgctatttatccagtagttaaaagtggattttgcgcattt
ttatttgcgcctacgactttgctttctcatcagcattataaaaccttaaaaaagcgtttt
gatccttttgatataaaggtttttaaactggatcgctttacaagtagtgcagaaaaaaaa
caagttttacaaaatttaaaagaaaataaagcttgtgtagttgtaggaactcatgcactt
ttaagtgtagaatgtgaaaatttagcccttgttattattgatgaagagcataaatttgga
gtgaagcaaaaagaaaagcttaaagaaatcactcaaaattcacatattttatccatgtca
gcaacccctataccaagaagcttaaatcaagctttaagttctataaaatcttatagtgtt
ttgcaaactccaccagaagatagaatggatgtaagaacttttgtcaaagaaaatgatgac
gcacttttaaaagaagctatagcaagagagttaagacgtggtgggcaaattttttatatt
cataatcatattgcaagtatagagcaatgtaaaaagcatttattagaacttttttctact
ttgcgtattttgattttacattctaaaatcgatgccaagatgcaagaagaagaaatgttg
aaatttgaaaacaaagaatatgatttgcttttaagtacctctatcgtagaaagtgggatt
gatttaccaaatgcaaatactatcatagtagaaaaaagcgatcgttttggcatggctgat
ttgcatcaattgcgtgggcgtgtaggaagaagtgataagcaaggttattgttatttttta
attgaagataaaaatgctatcacaaaagatgctttaaagcgtctagtttccttagaaagt
aattcttttttaggcgcaggttctattttggcttatcatgatcttgaaattcgtggcggt
ggaaatttattaggcgtagatcaaagtggacatattgagcaaattggatatagtttatat
cttaaaatgttagaagatgaacttaatgctttaagtaaaaatgaagtggatcaaaaagaa
aataaacttgatttaaaactcaatgttaatgcctttttaaacagcgaacttatcagcgaa
gatcgcttaagattagaactttatagaagacttagcaagtgtgagcaagttcatgaggtt
tatgagatcgaaggtgaaattgaagatcgctttggaaaacttgacatttatactaagcaa
tttttatctttgattactattaaaattttagctttaaataaatttaaaagcattagtaac
tatgagcaaaatattcaatttactgctttaaatgatgaaaaagaactcatcaaggcaaaa
agcaaagatgacgatgatattttagaggcaattttaacgcatttaagaaaggcttaa
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