Campylobacter jejuni subsp. jejuni 35925B2: UC78_0465
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Entry
UC78_0465 CDS
T03745
Symbol
rpoBC_2
Name
(GenBank) Bifunctional DNA-directed RNA polymerase subunit beta-beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cjq
Campylobacter jejuni subsp. jejuni 35925B2
Pathway
cjq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UC78_0465 (rpoBC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjq03021
]
UC78_0465 (rpoBC_2)
03400 DNA repair and recombination proteins [BR:
cjq03400
]
UC78_0465 (rpoBC_2)
Enzymes [BR:
cjq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UC78_0465 (rpoBC_2)
Transcription machinery [BR:
cjq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UC78_0465 (rpoBC_2)
DNA repair and recombination proteins [BR:
cjq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UC78_0465 (rpoBC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
Motif
Other DBs
NCBI-ProteinID:
AJP34968
LinkDB
All DBs
Position
451006..455559
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNESTKKVEYCDVLNEEQYQNLMQR
YENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAATNSEAKKKTIIKRLKVVENFLNS
NLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKA
GAKGSHKICTGIDEVMMALESKCLDIHASIQTMVDGRKITTTAGRLIIKSILPDFVPENS
WNKVLKKKDIAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQ
KAIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGR
VLAEDVIDPITNSVLFAEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYN
LKTYKNKEGKNIVANRRNAAILLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYIL
RKYDLAKPNELAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILV
EDGEPVVQNIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRH
YIPRESKIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAG
YSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYQLEPKTVIFVHDGDKIAQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNTAVIAEIDGVVRFDKPLRSKERIII
QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIKMGGE
PAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGEQNLKLKEQE
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaagtaatagaaatcaaagaagatgcaagacctagggattttgaagcg
tttcaactaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggagaagtaaaa
aaaccagaaactatcaattatagaaccttaaagcctgaaagagatgggcttttttgtgca
aagatttttggacctataagagattatgaatgtctttgtggtaagtataaaaaaatgcgt
tttaaaggtgttaagtgcgaaaaatgtggcgttgaagtagccaattcaaaagtgcgtcgt
tctagaatgggacatatcgagcttgtaactcctgtggctcatatttggtatgttaattct
cttccaagtcgtataggaacgcttttgggtgttaagatgaaagatcttgagcgtgtgctt
tattatgaagcttatatcgttgaaaatccaggcgatgctttctatgataatgaaagcacc
aaaaaagtagaatattgtgatgttttaaacgaagagcaatatcaaaatttaatgcaacgc
tatgaaaatagtggctttaaagcaagaatgggtggagaagttgttcgtgatttacttgca
aatttagatcttgtggcacttttaaatcagcttaaagaagaaatggcggctacaaattca
gaggctaagaaaaaaaccatcattaaacgcttaaaagtagtagaaaatttcttaaattca
aatttaaacgccaatactgatagcgatgaagccgtaccaaatcgtcctgaatggatgatg
attacaaatcttccagttttaccgccagatttgcgtcctttagtggctttagatggtgga
aaatttgcagtttctgatgtgaatgacttatatcgtcgtgttatcaatagaaatacacgt
cttaaaaaacttatggaacttgatgcacctgaaatcattataagaaatgaaaaaagaatg
cttcaagaggctgttgatgcactttttgacaacggtcgtcgtgctaatgctgtaaaagga
gcaaataaacgcccattaaaatctttaagtgaaattatcaaagggaagcaagggcgtttt
agacaaaacttacttggtaaaagggtggatttttcaggtcgtagtgttattgttgtgggt
ccaaaacttagaatggatcaatgtggtttacctaaaaaaatggctttagagctctttaag
ccacatcttttagctaagcttgaagaaaaaggttatgcaaccacagtaaaacaagctaaa
aaaatgatagaaaacaaaaccaatgaagtttgggaatgtttagaagaggtagtaaaaggg
catcctgttatgctaaaccgtgcgcctactttacataaactttctattcaagcttttcat
cctgttttagtggaaggtaaggctatacaacttcatcctttagtttgtgcagcatttaac
gcagactttgatggggatcaaatggcggtgcatgtgccactttctcaagaggctattgca
gaatgtaaagtgcttatgctttcatcaatgaatattcttttgccagcaagtggtaagtct
gtaaccgttccatcgcaagatatggttttaggaatttattatctttcattggaaaaagcc
ggtgctaaaggttcgcataaaatttgcacaggcattgatgaagtgatgatggcgcttgaa
agcaagtgtttggatattcatgcgagtatacaaactatggtagatggtagaaagattacc
actacagcaggaagattgattattaaatccattttacctgattttgtgcctgaaaatagc
tggaataaagttttaaagaaaaaagacattgccgcgcttgtggattatgtttataaacaa
ggtggtttagagattacagcaagtttcttggatagacttaaaaatttaggttttgagtat
gcaactaaagcaggtatttcaatttcgattgcagatattattgttcctaatgacaagcaa
aaagctatcgatgaagcaaaaaaacaagtaagagaaattcaaaattcttataatcttggt
ttgattacttcaggggaaagatacaataaaatcattgatatttggaaaagtacaaataat
gtcctttcaaaagagatgatgaagcttgtagaaaaagataaagaaggttttaactctatt
tatatgatggcagattctggtgctaggggtagtgcggctcaaatttctcagcttgctgcg
atgcgaggacttatgaccaaacctgatggttctattatcgaaactcctattatttcgaat
ttccgtgaagggctaaatgttcttgaatactttatttcaactcacggtgctagaaaaggt
cttgcagataccgctcttaaaacagcaaatgcgggttatttgacaagaaaacttatcgat
gttgcacaaaatgtaaaaattaccattgaagattgtggaacgcatgagggtgttgaaatc
aatgaaattaccgcagatagctctattatagaaactttagaagaaagaattttaggcagg
gttttagctgaagatgtgatcgatcctattacaaattctgtgctttttgcagaaggtact
ttaatggatgaggaaaaagcaaaaattcttggagaaagcggtataaaaagtgttaatatc
cgcacccctattacctgcaaagccaaaaaaggaatttgtgcaaaatgttatggtatcaat
cttggtgaaggtaaattggtaaaaccaggcgaagcagtaggaattatttccgctcaatct
atcggtgaaccaggaacgcagctaactttaagaactttccacagtgggggaactgcaagt
acggatttacaagatagacaagtaagcgcacaaaaagaaggttttataagattttataat
cttaaaacttataaaaataaagaaggtaaaaatatcgtagcaaatcgtagaaatgcggcg
attttacttgtggagccaaaaatcaaaactccatttaaaggtgtgattaatatagaaaat
attcatgaagatgtgattgtttctattaaagataaaaaacaagaagtaaaatacatacta
agaaaatacgatcttgctaaaccaaatgaattagcaggtgtaagtggtagtatagatgga
aaactttatttgccatatcaaagcggtatgcaagtagaagaaaatgaaagtatcgtagaa
gtgattaaagagggttggaatgtgccaaatcgtattccttttgcgagtgaaattttagta
gaagatggtgagcctgtagttcaaaatatcaaagcaggcgaaaaaggaacgcttaaattt
tatatccttaaaggcgatggtttagatagagtaaaaaatgttaaaaaaggcgatattgtt
aaagaaaaaggattctttgtagtgattgctgatgaaaatgatagagaagcaaaaagacac
tatattccaagagaatctaagatagaatttaacgatagtgaaaaaatcgatgatgcaaat
actatcattgcaagtgctcctaaaaaagaaagaaaagtgattgcagaatgggatgcttat
aataatactatcattgcagaaattgatggtgttgtaagctttgaggatattgaagcaggt
tatagtgccgatgagcaaattgatgaagctacaggtaagcgttctttagtgattaatgag
tatttaccaagcggagttagaccaactttggtaatcgcaggaaaaggtgataaggctgtg
cgttatcagcttgaaccaaaaaccgttatttttgttcatgatggtgataaaatcgctcaa
gcagatattttagcaaaaactccaaaagcagcagctaaatcaaaagatattacaggaggt
cttccaagggtttctgagctttttgaagcaagaaaaccaaaaaatacggctgtgattgca
gaaattgatggtgttgttcgttttgataaacctttgcgttccaaagaaagaatcattatc
caagcagaagatggaacaagcgctgagtatttaatcgataaatcaaaacatattcaagta
agagatggagagtttattcatgcaggtgaaaaacttacagatggagttgtttcgagtcat
gatgtacttaaaattttaggtgaaaaagccttgcattattatttgatttctgaaattcaa
caagtttatcgcggacaaggtgttgtgatttctgataaacatatagaagttatcgtttct
caaatgctaagacaagtaaaagttgtagatagtggacatacgaaatttatcgagggtgat
ttggtttcaagacgtaaattccgtgaagaaaacgaaagaatcatcaaaatgggtggagaa
ccagctattgctgagcctgtgcttttaggtgtaacaagagcagcgattggaagcgatagt
gtgatttctgcggcttcattccaagaaactaccaaagttttaaccgaagcaagtatagcg
ggtaaatttgactacttagaagatttaaaagaaaatgttattctaggtagaatgattcct
gttggaacagggctttatggcgaacaaaatttaaaacttaaagaacaagaataa
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integrated database retrieval system
