Campylobacter jejuni RM1221: CJE0528
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Entry
CJE0528 CDS
T00227
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cjr
Campylobacter jejuni RM1221
Pathway
cjr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJE0528 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjr03021
]
CJE0528 (rpoB)
03400 DNA repair and recombination proteins [BR:
cjr03400
]
CJE0528 (rpoB)
Enzymes [BR:
cjr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJE0528 (rpoB)
Transcription machinery [BR:
cjr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJE0528 (rpoB)
DNA repair and recombination proteins [BR:
cjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJE0528 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AAW35115
UniProt:
Q5HVY9
LinkDB
All DBs
Position
477149..481285
Genome browser
AA seq
1378 aa
AA seq
DB search
MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPI
HDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKD
IKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQII
PDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKF
LTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYL
ANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSFDIANDLANGVDAAIINSFAQDGETLK
LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH
KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG
LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT
HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG
FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA
RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME
QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHP
IVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFT
SVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSY
DKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKI
NRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVK
VYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQ
ILESHLGLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEEL
LNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGC
MYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgatatgttagataataaattaggaaatcgtttaagagtagacttctcaaacatt
tcaaaacaaatagaaatcccaaatcttctacaattacaaaaaaagagttttgattatttt
ttaaatcttgataatggtgaaagtggtatagaaaaagtttttaaatcaatttttcctatt
catgatccgcaaaatagattgagtcttgaatatgttagtagtgaaataggcaagccaaaa
tataccattcgcgaatgcatggaaagaggtttgacttattctgtaaatttaaaaatgaaa
atccgtcttactctgcatgaaaaagatgaaaaaacaggggaaaaagttggcgtaaaagat
attaaagaacaagaaatttatatccgcgaaattcctttaatgacagatcgtgtatctttt
atcattaatggggttgagagggtggttgtaaatcaattacatagaagtcctggtgttatt
tttaaagaagaagaaagttcaacggttgcaaataagcttgtttatacagcacaaattatt
cctgatcgtggttcgtggctttattttgaatacgatgccaaagatgttttgtatgtaaga
atcaataagcgtagaaaagttcctgtaactatgctttttagagctttagggtataaaaaa
caagatattattaagttgttttatcctattcagactatacatgtgaaaaaagataaattt
ttaacagaatttaatccaaatgattttatggatagaatagaatatgatattaaagatgaa
aaaggaaaaatcgttcatcaagctggaaaaagacttacaaagaaaaaagcagaacagctt
attaaagacggtttaaaatggatagaatatcctgtagaaattttacttaatcgttattta
gcaaatcctattattgataaagaaagtggagaggttttatttgattctttaactttgtta
gatgagagtaagcttgctaagattaaagagcaaaaaagttttgatatagcaaatgacttg
gctaatggcgttgatgcagcgattattaactcctttgctcaagatggagaaactctaaaa
cttcttaaacaaagtgaaaatatcgatgatgaaaatgatttagctgcgattagaatttac
aaagttatgcgcccaggtgaacctgtggtaaaagatgcagcgaaggcttttgtaaatgat
ttattcttcaatcctgaaagatacgatcttactaaggtaggtcgtatgaaaatgaaccat
aagttaggtcttgaagtgcctgagtatgttactgttttgactaatgaagatattattaaa
actgcaaaatatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcat
ttaggaaatcgtcgtatccgttctataggtgaacttttagctaatgaacttcatttaggt
cttgcaaaaatgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgat
aaagtaatgccttatgatttaatcaatcctaaaatgattactacaactatcattgaattt
tttacaggaggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttact
cataagcgtcgtttgtcagcgcttggtgaaggtggacttgtaaaagaaagagcaggtttt
gaagtgcgtgatgttcacgcgacacattatggtagaatttgtccagttgaaacacctgaa
ggtcaaaatattggtttgattaacactctttctacttatgcaaaagtaaatgaacttggc
tttgttgaagcgccatatagaaaagttgtaaatggtaaagtgactaatgaagttgtttat
cttacagcgacacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgct
aaaggcaatatagtagaagaatttgttgaggctaggcaagatggtgaaactatacttgca
agacgcgaagaagtgcaattaatcgatctttgctcaggtatggttgttggagttgcagct
tctttgattccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatg
caacgtcaagctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaa
caaattattgcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgag
aaagtggataataaaagcattttcattttaggtgaagatgataaaggtccatttattgac
cattacactatggagaaaaatttaagaaccaatcaaaatacaaattatattcaacaccct
attgttaaaaaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatg
gatcaaggcgaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggt
tataactatgaggatgctatagttgtaagtgagagaattattcgtgaagatacttttaca
agcgtgcacatttatgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaa
attaccaaagatattccaaatgtaaaagaagaagatgttgcgcatcttgatgagagcggt
attgcaaaaattggtacccatatcaaaccaggtatgattttggtgggtaaggtttctcca
aaaggtgaggttaaaccaactcctgaagaaagacttttaagagcgatttttggagaaaaa
gcaggacatgttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtg
gatgttaaaattttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttat
gataaagaaaaaatggctttagaaaaagagcatcatgatagacttttgatgatggataga
gaagaaatgcttcgtgtttgtgctcttctttccaaagcctctttaaatagcgatcaaaaa
attggagataaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatc
aatcgttttactttaacaactttgattaaagcttattctaaagagattcaaaaagaatac
gatgatttaaaaaatcatttccaaaatgagaagaaaaaattaaaagcagaacacgatgaa
aagcttgaaattttagaaaaagatgatattttaccaagtggggtaattaagcttgttaaa
gtttatattgctacaaaaagaaagcttaaagtcggtgataaaatggcaggacgtcatgga
aataaaggtatagtttcaactatagttcctgaagtagatatgccttatttgccaaatggt
aagagtgtggatattgcgcttaatccacttggcgttccaagtcgtatgaatataggtcaa
attttagaaagtcatttaggtttagttggacttagacttggggatcaaattcaagaaatt
tttgatagaaagcaaaaagattttcttaaagaattaagagcgaaaatgcttgaaatttgt
tctattccaagacttgcaaacgaaaaagaatttattaaaagcttaagcgatgaagagctt
ttaaactatgctagagactggagtaaaggagttaaattttctactcctgtttttgaaggt
gtaaatatagaagaatttagcaagctttttaaaatggctaagatagatatggatggcaaa
acagaactttatgatggacgcacgggggaaaaaattgcagagcgtgttcatgtaggatgt
atgtatatgctaaaactccatcacttggttgatgaaaaagttcatgcaagaagtacagga
ccttatagcttggttacccaacaacctgtgggtggtaaagcactctttgggggacaaaga
tttggagaaatggaagtttgggcacttgaagcttatggagcggctcacactttaagagaa
atgttaaccataaaatcagatgatgtagaaggtagatttagtgcttataaagcattgaca
aaaggtgaaaatgttccagcaacaggaattcctgaaacattttttgtattaaccaatgag
cttaaatctcttgctttagatgttgagatttttgataaggatgaagataatgagtaa
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integrated database retrieval system
