Campylobacter jejuni RM1221: CJE0529
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Entry
CJE0529 CDS
T00227
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cjr
Campylobacter jejuni RM1221
Pathway
cjr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJE0529 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjr03021
]
CJE0529 (rpoC)
03400 DNA repair and recombination proteins [BR:
cjr03400
]
CJE0529 (rpoC)
Enzymes [BR:
cjr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJE0529 (rpoC)
Transcription machinery [BR:
cjr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJE0529 (rpoC)
DNA repair and recombination proteins [BR:
cjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJE0529 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
Motif
Other DBs
NCBI-ProteinID:
AAW35116
UniProt:
Q5HVY8
LinkDB
All DBs
Position
481278..485831
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNESTKKVEYCDVLNEEQYQNLMQR
YENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGATNSEAKKKTIIKRLKVVENFLNS
NLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKA
GAKGSHKICTGIDEVMMALESKCLDIHASIQTMVDGRKITTTAGRLIIKSILPDFVPENS
WNKVLKKKDIAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQ
KAIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGR
VLAEDVIDPITNSVLFAEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYN
LKTYKNKEGKNIVANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYIL
RKYDLAKPNELAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILV
EDGEPVVQNIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRH
YIPRESKIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAG
YSADEQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIRMGGE
PAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGEQNLKLKEQE
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaagtaatagaaattaaagaagatgcaagacctagagattttgaagca
tttcaactaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggagaagtaaaa
aaaccagaaactattaattatagaaccttaaagcctgaaagagatgggcttttttgtgca
aagatttttggacctataagagattatgagtgtctttgtggtaaatacaaaaaaatgcgt
tttaaaggcgttaagtgtgaaaaatgtggtgttgaagtagcaaattcaaaagtgcgtcgt
tctagaatggggcatatcgagcttgtaactcctgtggctcatatttggtatgttaattct
cttccaagccgtataggaacgcttttgggtgttaagatgaaagatcttgagcgcgtgctt
tattatgaagcttatattgttgaaaacccaggtgatgctttctatgataatgaaagtact
aaaaaagtggaatattgcgatgttttgaacgaagagcaatatcaaaatttaatgcaacgc
tatgaaaatagcggctttaaagcaagaatgggtggagaagttgttcgtgatttacttgca
aatttagatcttgtagcgcttttaaatcagcttaaagaagaaatgggggctacaaattca
gaggctaagaaaaaaactatcattaaacgcttaaaagttgtagaaaatttcttaaattca
aatttaaacgccaataccgatagcgacgaagctgtaccaaatcgtcctgaatggatgatg
attacaaatcttccagttttaccgccagatttgcgtcctttagtggctttagatggtggg
aaatttgcagtttctgatgtgaatgacttatatcgtcgtgttatcaatagaaatacacgt
cttaaaaaacttatggaacttgatgcacctgaaatcattatcagaaatgaaaaaagaatg
cttcaagaggctgttgatgcgctttttgacaacggtcgtcgtgctaatgctgtaaaagga
gcaaataaacgcccattgaaatctttaagtgaaatcatcaaagggaaacaaggacgtttt
agacaaaatctactaggtaaaagggtggatttctcaggtcgtagcgttattgttgtaggt
ccaaaacttagaatggatcaatgcggtttacctaaaaaaatggctttagagctttttaag
ccacatcttttagctaagcttgaagaaaaaggttatgcaaccacagtaaaacaagctaaa
aaaatgatagaaaataaaaccaatgaagtttgggaatgtttagaagaggtagtaaaggga
catcctgttatgctaaaccgtgcacctactttgcataagctttctatccaagcttttcat
cctgttttagtggaaggtaaggctatacaacttcatcctttggtttgtgcagcatttaac
gcagactttgatggggatcaaatggcagtgcatgtaccgctttctcaagaggctattgca
gaatgtaaagtgcttatgctttcatcaatgaatattcttttaccagcaagcggtaagtct
gtaaccgttccatcgcaagatatggttttaggaatttattatctttcgttggaaaaagca
ggtgctaaaggttcgcataaaatttgtacaggcattgatgaagtgatgatggcacttgaa
agcaagtgtttggatattcatgcgagcatacaaactatggtagatggtagaaagattacc
actacagcaggaagattgattattaaatccatcttgcctgattttgtgcctgaaaatagt
tggaataaagtcttaaagaaaaaagacattgctgcacttgtagattatgtttataaacaa
ggtggtttagagattacagcaagtttcttagatagacttaaaaatttaggttttgaatat
gcaactaaagcaggtatttcaatttcgattgcagatattattgttcctaatgataaacaa
aaagctatcgatgaagcaaaaaaacaagtaagagaaattcaaaattcttataatctcggt
ttgattacttcaggggaaagatacaataaaatcattgatatttggaaaagtacaaacaat
gttctttcaaaagaaatgatgaagcttgtagaaaaagataaagaaggttttaactctatt
tatatgatggcagattctggtgctaggggtagtgcagctcaaatttctcagcttgctgcg
atgagaggacttatgaccaaacctgatggttctattatcgaaacgcctattatttcaaat
ttccgtgaagggctaaatgttcttgaatactttatttcaactcacggtgctagaaaaggt
cttgcagataccgctcttaaaacagcaaatgcgggttatttgacaagaaaactcatcgat
gttgcacaaaatgtaaaaattaccattgaagattgtggaacacatgagggtgttgaaatc
aatgaaattaccgcagatagttctattatagaaactttagaagaaagaattttaggcagg
gttttagctgaggatgtgattgatcctattacaaattctgtgctttttgcagaaggtact
ttaatggatgaggaaaaagcaaaaattcttggcgaaagcggtataaaaagtgtcaatatc
cgcactcctattacctgcaaagctaaaaaaggaatttgtgcaaaatgttatggtatcaat
cttggtgaaggtaaattagtaaaaccaggcgaagcagtgggaattatttccgctcaatct
atcggtgaaccaggaacgcagctaactctaagaactttccatagcgggggaactgcaagt
acggatttacaagatagacaagtaagcgcacaaaaagaaggttttataagattttataat
cttaaaacttataaaaacaaagaaggtaaaaatatcgtagcaaatcgtagaaatgcggcg
gttttacttgtggagccaaaaatcaaaactccatttaaaggtgtgattaatatagaaaat
attcatgaagatgtgattgtttctattaaagataaaaaacaagaagtaaaatacatatta
agaaaatacgatcttgctaaaccaaatgaattagcaggtgtaagtggcagtatagatgga
aaactttatttgccatatcaaagcggcatgcaagtagaagaaaatgaaagtatcgtagaa
gtgattaaagagggttggaatgtaccaaatcgtattccttttgcgagtgaaattttagta
gaagatggcgagcctgtagttcaaaatatcaaagcaggcgaaaaaggaacactcaaattt
tacatccttaaaggcgatggtttagatagagtaaaaaatgttaaaaaaggtgatattgtt
aaagaaaaaggattctttgtagtgattgctgatgaaaatgatagagaagcaaaaagacac
tatatcccaagagaatctaagatagaatttaacgatagtgaaaaaatcgatgacgcaaat
actatcattgcaagtgctcctaaaaaagaaagaaaagtgattgcagaatgggatgcttat
aataatactatcattgcagaaattgatggtgttgtaagctttgaggatattgaagcaggt
tatagtgctgatgagcaaattgatgaagctacaggtaagcgttctttagtaattaatgag
tatttacctagcggagttagaccaactttggtaattgcaggaaaaggtgataaagctgtg
cgttatcaccttgaaccaaaaaccgttatttttgttcatgatggcgataaaattgctcaa
gcagatattttagcaaaaactccaaaagcagcagctaaatcaaaggatattacaggaggt
cttccaagagtttctgagctttttgaagcaagaaaaccaaaaaatgcggctgtgattgca
gaaattgatggtgttgttcgttttgataagcctttgcgttctaaagaaagaattattatc
caagcagaagatggaacaagtgctgagtatttaatcgacaaatcaaaacatattcaagta
agagatggagagtttattcatgcaggtgaaaaacttacagatggagttgtttcgagtcat
gatgtgcttaaaattttaggtgaaaaagccttgcattattatttgatttctgaaattcag
caagtttatcgcggacaaggtgttgtgatttctgataaacatatagaagttatcgtttct
caaatgctaagacaagtaaaagttgtagatagtggacatacgaaatttattgaaggtgat
ttggtttcaagacgtaaattccgtgaagaaaatgaaagaatcattagaatgggtggagaa
ccagctattgccgagcctgtgcttttaggtgtaacaagagcagcgattggaagtgatagt
gtgatttctgcggcttcattccaagaaactaccaaagttttaactgaagcaagtatagca
ggtaaatttgactacttagaagatttaaaagaaaatgttattctaggtagaatgattcct
gttggaacagggctttatggcgaacaaaatttaaaacttaaagaacaagaataa
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integrated database retrieval system
