Campylobacter jejuni RM1221: CJE0734
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Entry
CJE0734 CDS
T00227
Name
(GenBank) RNB-like protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cjr
Campylobacter jejuni RM1221
Pathway
cjr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJE0734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjr03019
]
CJE0734
03016 Transfer RNA biogenesis [BR:
cjr03016
]
CJE0734
Enzymes [BR:
cjr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CJE0734
Messenger RNA biogenesis [BR:
cjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJE0734
Transfer RNA biogenesis [BR:
cjr03016
]
Prokaryotic type
tRNA degradation factors
CJE0734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Orthopox_F14
Motif
Other DBs
NCBI-ProteinID:
AAW34527
LinkDB
All DBs
Position
complement(669502..671436)
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AA seq
644 aa
AA seq
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MKEFLNSLSYGINSHEVSNEFKQILRELLANHIIKEHKNKYYLNNGFAFGVLDISSKGTG
FLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPSAKVILVLKRANETSLVIT
KRYGEAVLGMNIKTGLSTALKASQKSLKLLPLGTVLKIENENNNIIEVLGHIDDESIDEK
ISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIYF
DTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPHPLSENICSLKPHL
DRLAYCFKITLDHENKVIKEELFEGIINSKRRFNYDEVDEILVQKPDLKELSWLYELFEI
TKNLRKMRLKNAFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI
DIGVFRNHLSADTRKIDKLLNELRELGIDVNFKPNLPELIRDIQALADELNLRAEVDKLI
IKAQKKAEYSSVNAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLN
IESTCENLSTLEREADKVAFDFMDRKFARWAAKNIGKKFKALVVQNDGLCIAKLDDEIKG
ADIILYDTRVNLLESVEVQIIEADIVMAKIYAKITQRLIKEENV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaatttttaaacagtcttagttatggcattaactctcatgaagtaagtaatgaa
tttaaacaaattttaagagagcttttagccaatcatatcattaaagaacacaaaaacaaa
tactatcttaacaatggttttgcctttggggtgcttgatatttcgagcaaaggtacaggt
tttttacaatgctttgatgaaagttttaaaaaagatcttttgatagaaaacaaaaaccta
aaaggtgcaaactataaagatatagttgcagtaaaacttctacctttaaagaaaaaacgc
cccagtgcaaaggtgattttggttctaaaaagagccaatgaaacctctttagtgatcacc
aaaaggtatggcgaagccgtacttggaatgaatatcaaaacaggattaagcaccgcctta
aaagcttctcaaaaatccttaaaattgctacctttaggaacagttttaaaaatagaaaat
gaaaataacaatatcatagaagttttagggcatattgatgatgaaagtatagatgaaaaa
atctctttagcccttttcaataaaaacaacgaatttagcgacgcttgtatcaaagaagcc
ctagcaaacggcgatagtgttgatgcgagtatgtatgaaaatcgcatggatttaagagcc
ttgcctttttgcactatagatcctatacatgcaaaagattttgatgatgcgatttatttt
gacactcaaaaacgagaaatttatgtagctattgctgatgttagcgaatatgtttatgct
tatagtgctatagataaagaagcaagaaatcgtggattttctatttattttccgcacatt
gctatacctatgttaccgcatcctttaagtgaaaatatctgttctttaaaacctcattta
gatcgcttagcgtattgttttaaaatcacactcgatcatgaaaataaagtcatcaaagaa
gaactttttgaaggtattatcaactcaaaacgccgttttaattatgatgaagttgatgaa
attttggtacaaaaacctgatttaaaagaactttcatggctttatgagctttttgaaatc
acaaaaaatttacgcaaaatgcgtcttaaaaatgcctttgaatttcgcaccgaagaatta
agaatgaatttagatgaaaatttaagtctaaaaagcacagtttttgaaaaagacacgcct
tcgcataatttgatcgaagattgtatgcttttagccaataaagccgcagcaaaactcata
gatataggcgtttttagaaatcacttaagtgctgatacaagaaaaatcgataagctttta
aatgaattacgcgaactcggaatcgatgtaaattttaaacccaatcttcctgagctcata
cgcgacatacaagctttagctgatgaattaaatttaagagcagaagtagataaactcatc
atcaaagcacaaaaaaaagcggaatactctagcgtaaatgcggggcattttggcttaggt
tttgataaatactcacattttacaagccctataagaaggtattctgatcttattttacac
agacttttaaaagccaaacaaaaaaacgatgaaaaactttttaattatctacttttaaac
atagaaagcacttgcgagaatcttagcacacttgaaagagaggcggataaggttgctttt
gattttatggatagaaaatttgctagatgggcagctaaaaatataggcaaaaaatttaaa
gctttagttgtgcaaaatgatggactttgcatagctaaactagatgatgaaatcaaagga
gcagatataatcctttatgatacgcgtgtaaatttgctagaaagtgttgaggtgcaaatc
atagaagcggatatagttatggcaaaaatttatgctaaaatcacccaaagacttataaag
gaagaaaatgtatag
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