Chryseobacterium joostei: EG359_12960
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Entry
EG359_12960 CDS
T06494
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cjt
Chryseobacterium joostei
Brite
KEGG Orthology (KO) [BR:
cjt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjt03032
]
EG359_12960 (topA)
03400 DNA repair and recombination proteins [BR:
cjt03400
]
EG359_12960 (topA)
Enzymes [BR:
cjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EG359_12960 (topA)
DNA replication proteins [BR:
cjt03032
]
Prokaryotic type
DNA Topoisomerases
EG359_12960 (topA)
DNA repair and recombination proteins [BR:
cjt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EG359_12960 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
AZB00470
UniProt:
A0A1N7JL88
LinkDB
All DBs
Position
complement(2822196..2824757)
Genome browser
AA seq
853 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGIDLATFSPDYEVSADKK
KLVTELKAAVKKAEMVWLASDEDREGEAIAWHLADELKLKPENRKRIVFHEITKNAILKA
IENPRDIDQNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLIVEREKE
IREFTPKASFKLDGIFLNNNEQEIAAKLKKDFEKEEQAEKFLEQAKTTEFKVLNVETKPG
TRSASAPFTTSTLQQEASSRLGYNVTNTMRLAQRLYEEGFITYMRTDSVNLSQEAIEGAK
KQIISEYGAEYSSPRNYTTKSASAQEAHEAIRPTDFGVKSIGDAQLNKLYQLIYRRTLAS
QMSNAKIEKTVIEIGNASLPHHFEAQGEVIIFDGFLKAYGIVKTEDEDEENNEKLLPKVK
VGEVLSYKTITATEKFTRPSARYTEAGLVRKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IEPQTRQVIKMSLVKDSIKKVVLDEKFGGDKNKFIPTDIGEVVNDFLTDNFKEILDYGFT
ARVEEGFDEIANGDQKWKEMMTDFYSKFHPRIEDVEENADRATGDRLLGVDPKTGKNVHA
RIGRFGAMIQIGETDDEEKPIFASLMSGQNIATITFEEAIELFKLPFDLNEFEGHPVSVG
VGRFGPYVKWGETFISIPKGEDPLSINQNRAEEIINEKKKADAPIATYKGDPVTKGTGRF
GPFIKYKDLFINVPKKYNFDNLSQSDINELIDAKLEKEANRYIQQWEKEKISIENGRWGP
FIKFGKAMFKIPKKSDDTKYDGEELKDISLDEVKKWITDQDKNAFAEKKKPAAKKATTAK
KTTAAKKPAAKKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatttagtaatcgtagagtccccggcaaaagcaaaaactattcagaaatat
ctaggtaaggatttcgaagtaaaatccagtttcggtcacatccgagatctgcctaaaaag
ggtatgggaatagaccttgccacctttagtcctgattacgaagtttcagcagacaagaag
aaattggtgacagaattaaaggctgcagtaaagaaagcagaaatggtatggctggcttcc
gatgaagaccgcgagggagaagctattgcatggcacttagcggatgaattgaaattgaag
cctgaaaacagaaaaagaattgttttccacgagattactaaaaatgccattctaaaagca
attgaaaaccctagggatattgatcaaaacttggtaaatgcccagcaggcaagaagagta
ctggacagaattgtaggttttgaaatgtctccggttttatggaaaaaagtaaaaccagga
ctttcagcaggaagagtacaatccgtagccgtaagattaattgttgaaagagaaaaagaa
atccgtgaatttaccccaaaggcaagctttaagctagacggaatcttcttaaacaataat
gagcaggaaattgctgcaaagcttaaaaaagactttgagaaagaggaacaagcagaaaaa
ttcctcgagcaggcaaaaactacagaatttaaagttctcaatgttgaaacaaaacctgga
actcgctcagcatctgccccctttactacttctacactacagcaggaagcttcatcaaga
ttagggtataatgtgaccaataccatgcgtctggcacaaagactatacgaagaagggttc
attacctatatgagaacagactccgtaaacctttctcaggaagcaattgaaggagcaaaa
aaacagattatttcagaatatggagcagagtattcttctccaagaaactatactacaaaa
tctgcatcagcacaagaagctcacgaagcaattcgtcctacagacttcggtgtgaaaagc
ataggagatgctcagttgaataagctgtaccaattgatctacagaagaacattggcatcc
caaatgtccaatgcgaagattgaaaaaacagtaattgagattggaaacgcttcattgcca
catcacttcgaagcacaaggagaagtgatcatctttgatggtttcctaaaggcttacggt
attgtaaaaaccgaagatgaagatgaagaaaacaatgaaaaactattaccaaaggtaaaa
gttggagaagtattaagctataaaaccatcactgctactgaaaaattcacaagaccaagt
gcaagatatactgaagccggattggttagaaaattagaagagctagggattggtagacca
tctacctacgcaccaacaattcagaccattcagaacagagaatatgtggacaagcgtgaa
attgagccacaaactcgtcaggtgatcaaaatgtctttagtaaaagacagtatcaaaaaa
gtagttcttgatgaaaagtttggaggcgataaaaataaatttattcctacagatatagga
gaagttgtaaatgacttccttaccgataactttaaggaaatcctggactacggctttacc
gcaagagtagaagaaggtttcgatgagattgcaaacggagatcagaaatggaaggaaatg
atgacagacttctattcaaaattccacccaagaattgaagatgtagaagaaaatgcagac
cgtgcaacaggagacagacttttaggagttgatccaaaaacagggaaaaatgttcacgcc
agaatcggaagatttggagctatgattcagattggagaaacagatgatgaagaaaagcca
atctttgcttcattaatgtccggtcagaatattgcaaccattacttttgaagaagcgata
gaactgtttaagctgccttttgatctgaatgaatttgaaggacatccggtttctgttgga
gttggaagattcggaccttatgtgaaatggggagaaaccttcattagtattcccaaaggt
gaagatccgctttcaatcaatcaaaaccgtgcagaagaaatcattaacgagaagaaaaag
gcagatgcacccattgcaacttataaaggagatcctgtaaccaaaggaacaggtagattc
ggaccatttatcaaatacaaggatcttttcataaacgttccgaagaaatataactttgat
aatctttctcagagtgacatcaacgaattgattgatgccaagctggaaaaagaagccaac
agatacatccagcaatgggaaaaagaaaaaatttccattgaaaacggaagatggggacct
ttcatcaagtttggaaaagcaatgtttaaaattccaaagaaaagtgatgataccaaatat
gatggagaagaattgaaagatatttctcttgatgaagttaaaaagtggatcactgatcag
gataaaaatgcctttgcggaaaagaaaaaaccagctgcaaaaaaagcaaccactgccaag
aaaactacagctgctaaaaaaccagctgcaaaaaagaaataa
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