Chryseobacterium joostei: EG359_13660
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Entry
EG359_13660 CDS
T06494
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cjt
Chryseobacterium joostei
Brite
KEGG Orthology (KO) [BR:
cjt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cjt03016
]
EG359_13660
Enzymes [BR:
cjt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EG359_13660
Transfer RNA biogenesis [BR:
cjt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EG359_13660
Prokaryotic type
tRNA splicing ligases
EG359_13660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZB00601
UniProt:
A0A1N7JUT0
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All DBs
Position
complement(2974517..2975908)
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AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHYVKSLLKEILIHPENFEKDLT
FGQIAETLLSSKKTEKRMLNSQRAAFQVFGNNISDEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLNGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDLIPILRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGMGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKETHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPESLNSASHGAGRAHSRGECRSLFTEHDIKKELKLKNV
TLMGGNTEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattgaaactgggctatcccaataaccaa
agcgtaaacgtagccttggaagtcatgaaaagaaattttgcaaccaaaaatatccattat
gtaaaatctcttttaaaggaaattctgattcatccggagaattttgagaaagatttaacc
ttcggacagattgcagagaccttactttcatccaagaaaacagaaaaaagaatgttgaat
tcacaacgtgcagcttttcaggtcttcggaaataatatttcggatgaagctaaaaatcag
ctgtacactgcattgaaactaccaatctctactcagggagctttaatgcctgatgctcac
agtgggtacggacttccgataggaggagttctggcggtagaaaatgccgtgattccctat
ggagtgggaatggatattggctgtagaatgagcttaagtattttggatacaccggtttca
tatcttaacggagcaagggataaatatgaaaaagcccttgccgaacatacaaaatttgga
atgtatgagacacacaaatctcatatagaccatgaaatctttgatagggatacattcgat
ctgatccctattcttagaagattaaaaggaaaagccatcaagcagatgggatcatcagga
ggcggaaatcattttgttgagttcggagaagtggaaatcactgaagaagatgaacaaatt
ggcttaccaaaaggaaaatacctgggaatcctttcacatagcggttccagaggaatggga
gcagaaattgcccagtattactcaagggtagccgtagaacaatgtccgttaccaaaagaa
gcacagcaatttgcatggcttgatttgagtacccatcttggcttggaatactggacagcc
atgaatcttgcgggagactatgcttcagcgtgtcatgatgatattcacagaagattggtg
aaagccgttggcggaagagtgaaagccagaattgaaaaccatcacaattttgcatggaaa
gaaactcacaacggaaaagaagtaattgttcacagaaaaggagccactccagccaatgaa
aatgagttgggaatgattccgggatccatgacggcaaaaggatttatcgtccgaggaaaa
ggaaatcctgaatctcttaactcagcatcacacggagctggaagagcacactcaagaggt
gaatgcagaagtcttttcaccgaacatgatatcaaaaaggagctgaaacttaaaaacgtc
accctaatgggcggcaatacggaagaagcaccaatggcctataaggatattcatgaggta
atgaatgcacaaagtgaattggtagacattctgggaacatttcaaccaagaattgtgagg
atggatagataa
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