Chryseobacterium joostei: EG359_20245
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Entry
EG359_20245 CDS
T06494
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cjt
Chryseobacterium joostei
Pathway
cjt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG359_20245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjt03019
]
EG359_20245
03009 Ribosome biogenesis [BR:
cjt03009
]
EG359_20245
Enzymes [BR:
cjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG359_20245
Messenger RNA biogenesis [BR:
cjt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG359_20245
Ribosome biogenesis [BR:
cjt03009
]
Prokaryotic type
rRNA helicases
EG359_20245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZB01779
UniProt:
A0A1N7KCH0
LinkDB
All DBs
Position
4391779..4393494
Genome browser
AA seq
571 aa
AA seq
DB search
MNLFTETNLRPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDETSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVDQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILRETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSA
TKIEINEKFIPTGDQIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSKFTKEELVHQLLQ
FQLKDLALYYKDKHDLVEQKFSSRDDDYSRRDRGRDRDRDRGRDRDVRDSRDRDRGRDRD
RGGKPRRKDENMVRFFFNLGKKDHLKKLDVLDIINKATGEGKSKKRAEIGDIEILEKFSF
FEVEKSFKDNVLSNIQSMKFKGKDMRAEVAN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagacctgatatccttaaggcaattggcgaactg
ggctacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcaaacagggacaggcaagacagcagcgttttcgcttccg
attttggatatgattgacgaaacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaagacataaagaattactctaagtacatgaaggac
atcaaaaccactgcggtttatggtggaagtagtattgtagatcagatgagatctttgaag
gacaaaccacagattattgtgggaactccaggaagagtaattgatcttatcaacagaaaa
gcacttgatttttctgctattcattggttggtattagatgaggctgatgaaatgctttct
atgggattcaaagatgaattggaaacaattctaagagaaactccggaaacaaaacaaact
ttcttattctcggctacgatgaataaagaagtggaaagaatttctaaaaattaccttaca
aaaccacaccgtatttcagtaggttctatcaacgaagtgaagaagaacattacacacgaa
tattacgtggtaggttaccgtcagaaaaaagaagcattgaagagattgatcgatgcaaac
cctaatcagtactccattattttctgtagaacaagaatggaaactcaggaggttgctgat
ttcttgatgcagaatggctatgcggcagatgctcttcacggagacctttctcaagcacag
agagacacggtaatgaagaaatttagattgaagaacattgatattcttgtagcaacagac
gttgcagcaagaggattggatgtaaactctctaactcacgttattcacttctctttacca
gatgatcctgaagtattcgttcacagaagcggaagaacaggtagagctggaaaagacggt
atttccatggctttaattaagcctgaagaaagcagaaaattgaagcaaatcaaatctgca
acaaagattgaaattaacgaaaaattcattcctacaggagatcagattatcaaggctcag
gtgggaggtgtgttcgagaaattattgacagaacacgaagacttattcgaatttgatgat
agcttaatcccggatctaagcaaatttacaaaagaagaattggtgcaccagttgctacaa
ttccaattaaaggatcttgccttatattacaaagacaaacatgatcttgttgagcagaag
tttagcagtagagatgatgattactcaagaagagatcgtggtcgtgatagagacagagat
agaggtcgtgacagagatgtaagagatagcagagacagagatcgcggaagagatagagat
cgtggcggaaagccaagaagaaaagatgagaacatggtaaggttcttcttcaatcttggt
aagaaagatcacttgaagaagcttgatgttttagatattatcaataaagctacaggtgaa
ggaaaaagcaagaaaagagctgagatcggtgatatcgaaatcttagagaaattctctttc
ttcgaggttgaaaaatcgttcaaagacaatgtcttgagcaatattcaatccatgaagttc
aaaggaaaagatatgagggctgaagttgcaaactaa
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