Campylobacter jejuni subsp. jejuni 81116: C8J_1026
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Entry
C8J_1026 CDS
T00597
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cju
Campylobacter jejuni subsp. jejuni 81116
Pathway
cju03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C8J_1026 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cju03400
]
C8J_1026 (mfd)
Enzymes [BR:
cju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C8J_1026 (mfd)
DNA repair and recombination proteins [BR:
cju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C8J_1026 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
Josephin
Motif
Other DBs
NCBI-ProteinID:
ABV52625
LinkDB
All DBs
Position
complement(1032600..1035536)
Genome browser
AA seq
978 aa
AA seq
DB search
MQASFYEYLQNPKICELLLCKDEKQADLLAQVSRFKGLKTFVLPDFRAQFGDDLRAFSKE
LFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHIDKKQNFNLKCFEDEISRL
GYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEEIESIRYFDLQSQKSIPNELE
HFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSLGFWCIDDFFDYLELDFLACEKF
DINEYEKDVSFVNAKILPQAKKFKELQSSYNKDFFEFHKNKKITLLAKNEALFKALELED
TQNIYFVKSDLRLNLISPEELIISLNQKEKQKTRKKASLIIDELKNGDYIVHEDYGVGKF
LGLEMIVISGAKKEFVAIEYQNSDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKL
KEKLKTKLLAIASEIVIMAAKRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEIL
QDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRF
DPFDIKVFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFG
VKQKEKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD
ALLKEAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKVQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFL
IEDKNAITKDALKRLVSLESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLY
LKMLEDELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEV
YEIEGEIEDRFGKLDIYTKQFLSLIIIKILALNKFKSISNYEQNIQFTALNDEKELIKAK
SKDDDDILEAILTHLRKA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcattttatgaatacctacaaaatccaaaaatttgtgaacttttgctttgt
aaagatgaaaaacaagcagatttacttgctcaagtttcacgatttaaggggttaaaaacc
tttgttttacctgattttagagcgcagtttggagatgatttaagggctttttccaaagaa
ctttttgatctttgcaagattttaaatgcttatcataaagaagaagaaaaaaaaatcctt
atttctcctttaaatactgttttaaaaaaacttccttcaaaaaaacatttgcaaaattat
catatcgataaaaaacaaaattttaatttgaaatgttttgaagatgaaatttcaagattg
ggatacgaatttgtagatatagttcaggataaaggtgaaatttcaattcgtgcggatatt
attgatattttttgtatcaatgaagaaaatcctattagaattttgctttttggcgaagag
attgaaagtataagatattttgatttgcaaagtcaaaagtctattcctaacgaactagaa
cattttgaaatttgtccttttttaaaatattttgacaaagaaaattatgaaatttttaag
gacaaattagaagattttcaaagtgatactttaatacatgatatcaattctttagggttt
tggtgtattgatgatttttttgattatttagaacttgattttttagcttgtgaaaagttt
gatattaacgaatatgaaaaagatgtaagttttgtgaatgcaaaaattttacctcaagct
aaaaaatttaaagaattgcaaagttcttacaataaagatttttttgaatttcataaaaat
aaaaaaatcacacttttagctaaaaacgaagctttatttaaagctttagagcttgaagat
actcaaaatatctattttgtaaaaagtgatttaaggcttaatcttattagtcctgaagag
ctaatcatttctttaaatcaaaaagaaaaacaaaaaacaagaaaaaaagctagtttgatt
atagatgagcttaaaaatggggattatatagtacacgaagattacggagtgggtaaattt
ttaggtcttgagatgatagtgataagcggagcaaaaaaagagtttgttgctatagagtac
caaaattctgataagcttttattaccagtggaaaatctttatttaattgataaatatttg
ggcgtgagtggatctattccaagtttagacaaactaggtaaaacaagctttattaaactt
aaagaaaaattaaaaactaaacttttagccatagcttctgaaattgttattatggcggct
aaaagatctttagtgcaagcaaaaaaaatcacagtggatttaagtagacaagctgatttt
ataactagtgcgggttttatttatacaagcgatcaagagaaagcttgtcatgaaattttg
caagattttcaaagtggaaaagttatggataggcttttaagcggtgatgtgggttttgga
aaaacagaagtcgctatgaatgctatttatccagtagttaaaagtggattttgtgcattt
ttatttgcgcctacaactttgctttctcatcagcattataaaaccttaaaaaagcgtttt
gatccttttgatataaaggtttttaaactggatcgctttacaagtagtgcagaaaaaaaa
caagttttacaaaatttaaaagaaaataaagcttgtgtagttgtaggaactcatgcgctt
ttaagtgtagaatgtgaaaatttagcccttgttattattgatgaagagcataaatttgga
gtgaagcaaaaagaaaagcttaaagaaatcactcaaaattcacatattttatccatgtca
gcaacccctataccaagaagcttaaatcaagctttaagttctataaaatcttatagtgtt
ttgcaaactccaccagaagatagaatggatgtaagaacttttgtcaaagaaaatgatgac
gcacttttaaaagaagctatagcaagagagttaagacgtggtgggcaaattttttatatt
cataatcatattgcaagtatagagcaatgcaaaaaacatttattagaacttttttctact
ttgcgtattttgattttgcattctaaaatcgatgccaaggtgcaagaagaagaaatgttg
aaatttgaaaacaaagaatatgatttgcttttaagtacctctatcgtagaaagtgggatt
gatttacctaatgcaaatactattatagtagaaaaaagcgatcgttttggtatggccgat
ttgcaccaattgcgtgggcgtgtgggaagaagtgataagcaaggttattgttatttttta
atcgaagataaaaatgctatcacaaaagatgctttaaagcgtctagtttctttagaaagt
aattcttttttaggtgcaggttctgttttggcttatcatgatcttgaaattcgtggcggt
ggaaatttattaggcgtggatcaaagtggacatatcgagcaaattggatatagcttatat
cttaaaatgttagaagatgaacttaatgctttaagtaaaaatgaagtggatcaaaaagaa
aataaacttgatttaaaactcaatgttaatgcctttttaaacagcgaacttatcagcgaa
gatcgcttaagattagaactttatagaagacttagcaagtgtgagcaagttcatgaggtt
tatgagatcgaaggtgaaattgaagatcgctttggaaaacttgacatttatactaagcaa
tttttatctttgattattattaaaattttagctttaaataaatttaaaagtattagcaat
tatgagcaaaatattcaatttactgctttaaatgatgaaaaagaactcatcaaggcaaaa
agcaaagacgatgatgatattttagaggcaattttgacgcatttaagaaaggcttaa
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