Campylobacter jejuni subsp. jejuni YH001: QZ67_00646
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Entry
QZ67_00646 CDS
T03744
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cjy
Campylobacter jejuni subsp. jejuni YH001
Pathway
cjy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QZ67_00646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjy03019
]
QZ67_00646
03016 Transfer RNA biogenesis [BR:
cjy03016
]
QZ67_00646
Enzymes [BR:
cjy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QZ67_00646
Messenger RNA biogenesis [BR:
cjy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QZ67_00646
Transfer RNA biogenesis [BR:
cjy03016
]
Prokaryotic type
tRNA degradation factors
QZ67_00646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Orthopox_F14
Motif
Other DBs
NCBI-ProteinID:
AJA54749
LinkDB
All DBs
Position
complement(589921..591855)
Genome browser
AA seq
644 aa
AA seq
DB search
MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLNNGFAFGVLDISSKGTG
FLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPSAKVILVLKKANETSLVIT
KRYGQAVLGMNIKTGLSTALKASQKSLKALPLGTILKIENENNNIIEVLGHIDDESVDEK
ISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIYF
DTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPRPLSENICSLKPHL
DRLAYCFKITLNHENKVIKEELFEGIINSKHRFNYDEVDEILIQKPDLKELSWLYELFEI
TKNLRKMRLKNAFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI
DIGVFRNHLSADARKIDKLLNELRELGIDVNFKPNLPELIRDIQALADELNLRAEVDKLI
IKAQKKAEYSSINAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLN
IESTCESLSTLEREADKVAFDFMDRKFARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKG
ADIILYDTRVNLLESVEVQIMEADIVMAKIYAKITQKLIKEENV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaatttttaaacagtcttagttatggcattagctctcacgaagtaagcaatgaa
tttaaacaaattttaagagagcttttagctaatcatatcatcaaagaacacaaaaacaaa
tactatcttaacaatggttttgcctttggagtacttgatatttcaagcaaaggcacaggt
tttttacaatgctttgatgaaagtttcaaaaaagatcttttgatagaaaacaaaaaccta
aaaggtgcaaactataaagatatagtcgcagtaaaacttctacctttaaagaaaaaacgc
cccagtgcaaaggtgattttggttttaaaaaaagccaatgaaacttctttagtgatcacc
aaaaggtatggccaagccgtgcttggaatgaatatcaaaacaggattaagcactgcctta
aaagcttctcaaaaatccttaaaagcactgcctttagggacaattttaaaaatagaaaat
gaaaataacaacatcatagaagttttagggcatatcgatgatgaaagcgtagatgaaaaa
atctctttagctctttttaataaaaataacgaatttagcgatgcttgcattaaagaagcc
ttagcaaacggagatagcgttgatgcgagtatgtatgaaaaccgcatggatttaagagcc
ttgcctttttgcaccatagatcccatacatgcaaaagattttgatgatgcgatttatttt
gacacccaaaaacgagaaatttatgtagctattgctgatgttagcgaatatgtttatgct
tatagcgctatagataaagaagcaagaaatcgtggattttctatttattttccacatatt
gctatacctatgctacctcgtcctttaagtgaaaatatctgttctttaaaacctcattta
gatcgcttagcgtattgttttaaaatcacactcaatcatgaaaataaggtcataaaagaa
gaactttttgaaggtattatcaactcaaaacaccgttttaattacgatgaagttgatgaa
attttgatacaaaaacctgatttaaaagagctttcatggctttatgagctttttgaaatc
acaaaaaatttacgcaaaatgcgtcttaaaaatgcctttgaatttcgcaccgaagaatta
agaatgaatttagatgaaaatttaagtctaaaaagcacagtttttgaaaaagacacgcct
tcgcataatttgatcgaagattgtatgcttttagccaataaagccgcagcaaaactcata
gatataggtgtttttagaaatcacttaagtgctgatgcaagaaaaatcgataagctttta
aatgaattacgcgaactaggcatcgatgtaaattttaaacccaatcttcctgaactcata
cgcgacatacaagctttagccgatgagttaaatttaagagcagaagtagataaactcatc
atcaaagcacaaaaaaaagcagaatattccagtataaatgcagggcattttggcttaggt
tttgataaatactcacattttacaagccctataagaaggtattctgatcttattttacac
agacttttaaaagccaaacaaaaaaacgatgaaaaactttttaactatctgcttttaaac
atagaaagcacttgcgagagtcttagcacgcttgaaagagaagcggataaggttgctttt
gattttatggatagaaaatttgctagatgggcagctaaaaatataggcaaaaaatttaaa
gctttagttgtgcaaaatgatggagtttgcatagctaaactagatgatgaaatcaaagga
gcagatataatcctttatgatacgcgtgtaaatttgctagaaagtgttgaagtgcaaatc
atggaagcggatatagttatggcaaaaatttatgctaaaatcacccaaaaacttataaag
gaagaaaatgtatag
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