Comamonas kerstersii: B5M06_00645
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Entry
B5M06_00645 CDS
T04758
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cke
Comamonas kerstersii
Pathway
cke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5M06_00645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cke03019
]
B5M06_00645
Enzymes [BR:
cke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B5M06_00645
Messenger RNA biogenesis [BR:
cke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5M06_00645
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AQZ96992
UniProt:
A0A0W7Z352
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All DBs
Position
137196..139133
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AA seq
645 aa
AA seq
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MTFEELNLAPAIVKAVLEQGYENPTPIQAQAIPAVLTGKDLLAGAQTGTGKTAAFSLPIL
HRLTQGGTQRPAGGIRALILTPTRELAAQIEENIRSYAKYLDVTSAVIFGGVGMKPQIDR
INKGVDILVATPGRLLDLQQQGFMDLSSVEVLVLDEADRMLDMGFIHDVKKVLALVPENK
QSLLFSATFSDEIRALANGLLKNPESIQVTPRNTTVQRIKQVIHPVGRNKKKDVLLHIIR
ENNWSQVLVFTRTKFGANHVAEFLTQNGISAMALHGNKSQSARTQALLGFKTGELRALVA
TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGREGYAVNLVCMDEEGFMMEIE
RFTKQEIPVVPMPEFGPEPGEKAEPIAMGRQTIWGGAGKPPSREVMQAAARAARQEMMER
IRSTKATQGERAGRGRRNPRGEAAAPDAENGAPLEQAPRRGNGPRRTPRQGMAPRHRQSD
ATSFEQTADIQSADAAVALPAEQGAGERTERDAQPRRRNGQGYNRSRQRPSRDNPRSAAP
AESQPARPARAPRPARNAYGDEPLSRFEDQPPRPNAHLGTQLGNPVTRAPRSHSSGQPDP
TLTSIDLMMERPRRGNGGGFRGGNGGGGFRGGNNRRGGNGGGFNR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaacttggcacccgccattgtgaaagcggtgctggaacagggt
tacgaaaacccaacccccattcaggcacaagcgattcctgctgtgctgacaggcaaagac
ctgctggccggtgcgcaaaccggcacaggcaaaaccgctgccttctcgctgcctatcctg
caccgcctcacacagggcggcacacagcgcccagcaggtggcattcgcgccctgatcctc
actcctacccgtgaactggctgcgcagattgaagaaaacatccgctcctacgccaagtat
ctggacgtcacctctgccgtgatctttggcggcgtcggcatgaagccccagatcgaccgc
atcaacaagggcgtagacattctggtggccacacccggccgtctgctggacctgcagcag
caaggcttcatggacctgtccagcgtagaagtgctggtgctggacgaagccgaccgcatg
ctggacatgggctttatccacgacgtgaagaaggtgctggccctggtgcccgagaacaag
cagagcctgctgttttccgccactttcagcgatgaaatccgcgccctggccaacggcctg
ctcaagaaccctgagagcattcaggtcacaccccgcaacaccacggtgcagcgcatcaag
caggtcatccaccctgtgggccgcaacaagaaaaaggatgtgctgctgcacatcatccgc
gagaacaactggagccaggtactggtgttcacgcgcaccaagttcggcgccaaccatgtg
gctgagttcctgacccagaacggcatctctgccatggctctgcacggcaacaagagccag
agtgcacgtacacaggcactgctgggcttcaagaccggcgagctgcgcgcgctggtggcc
accgacattgctgcacgtggcattgacatcgacgagctgccacacgtagtgaactacgaa
atccccaacgtacccgaagactacgtgcaccgcattggccgtaccggccgcgccggtcgc
gaaggctatgccgtgaacctggtgtgcatggacgaagaaggcttcatgatggagatcgag
cgctttaccaagcaggaaatccccgtcgttcccatgcctgaatttggccctgagcctggt
gaaaaggcagagcccatcgccatgggccgccagacgatctggggcggcgctggcaagcca
cccagccgcgaagtcatgcaggctgccgcacgtgctgcacgccaggagatgatggaacgc
atccgctccaccaaggctacccagggtgagcgcgctggccgtggtcgccgcaatccacgt
ggtgaagctgctgcacctgatgcagaaaacggcgctccactggagcaggcccctcgtcgc
ggcaacggccctcgccgcacacctcgccaaggcatggcacctcgccatcgccagagcgat
gccaccagctttgagcagacagcagacatccagtctgcagatgcagccgtcgcactgcca
gccgagcaaggcgctggcgaacgcacggagcgcgatgcacaaccccgccgccgcaatggc
cagggctataaccgctcgcgccagcgtccttcgcgtgacaatccacgcagcgctgccccc
gcagaaagccagcccgcacgtcctgcacgcgcgccacgtcccgcacgcaatgcgtatggc
gatgaaccgctgagccgctttgaagaccagccaccacgccccaatgcacacctgggcacc
cagctgggtaaccctgtcacccgtgcgcctcgctcgcacagcagcggccagcctgacccc
acactgaccagcattgacctgatgatggagcgcccacgccgtggcaatggcggcggcttc
cgtggcggcaatggcggcggaggcttccgcggcggtaacaaccgtcgtggtggcaacggc
ggcggcttcaaccgctaa
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