Comamonas kerstersii: B5M06_02215
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Entry
B5M06_02215 CDS
T04758
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cke
Comamonas kerstersii
Pathway
cke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5M06_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cke03019
]
B5M06_02215
03009 Ribosome biogenesis [BR:
cke03009
]
B5M06_02215
Enzymes [BR:
cke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B5M06_02215
Messenger RNA biogenesis [BR:
cke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B5M06_02215
Ribosome biogenesis [BR:
cke03009
]
Prokaryotic type
rRNA processing factors
B5M06_02215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AQZ97255
UniProt:
A0A0W7YX56
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All DBs
Position
474514..477531
Genome browser
AA seq
1005 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGIAPSQARINDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEERAELKEAMDQLEYPKGMSIIARTAGIGRTAPELQ
WDLNYLLQLWSAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIFEQAQ
QFMQHVMPEHASRVKRYRDDAPLFSRFQIEHQIESAYSRTVQLPSGGAIVIDHTEALVSI
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEDAKNRREVENR
LREALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKSLETPH
YKLERLKHDDPRLENLDASYKLAEEVEDVTKVTRRSQEPTNKQTPVIKGVLPDAPPAPEA
RPQPAARAAKNGRPAAQQAAAAAPRTEVREQGFFAWLKSLFGFGPKPAPVEPVAAPVKPE
GTREARNGERNGRGGRNGRNGERGERGERNGRNERNGRNGERNERNERGDNESSHRREDR
QDRQERVERNADNARPQREPRNRGERQPRNLEAAEQRNQQGVTGAEHNTPEAAERPERQP
RQRRERQPRNVEVQAQAAAAQQLEATAQAVQETVNEAQAQDAAAPATNGEDAPRNGRRSR
DRYGRDRRNNRERQPAARDENAALAAAAENAEVTQAPDTSAEAVTEVNEQSAPRRSYFSQ
VQPAVQAAEPAAAAQPAAEAAPAVPVAEAANAVVEPAAAPAVQEVAAVAPEAVEQPQAEA
AAEPVQAAAPAEVPAAQPVRTAAYILPVQELQELASAAGLQWVNSDAEKVAAVQAAIAAE
PKPVHIPRERPPVVILDEGPLVLVETRKDLSAMVLPFEQTPEHNA
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgcaacgcagtccgaagaacgccgcctcgcgatcgttgat
ggacagaagctgctggactacgagatcgagatcgaaggtcgggaacaacgcaaaggcaat
atctacaaagccgtcgtcacccgtgtcgagccctctctggaagcatgctttgttgactat
ggtgaagaccgccacggcttcctgcctttcaaggaaatctccaagcaatactttgccgaa
ggcattgcccccagccaggcccgcatcaacgatgtgatcaaggaaggccaggagctgatc
gttcaggttgaaaaagaagaacgcggcaacaagggcgcagccctgaccacctttatctcg
ctggctggccgctatgtggtgctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcatcgagggcgaggaacgcgccgagctcaaggaagccatggaccaactggagtacccc
aaggggatgtccatcatcgcgcgcacagccggtatcggccgcaccgcgcccgagctgcaa
tgggacttgaactacctgctgcagctgtggagcgccattgacggtgcggccaaggctggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgccattcgcgactac
ttcaacaacgacatcggcgacatcctgatcgacaccgacgacatcttcgagcaggcgcag
cagttcatgcagcacgtcatgcccgagcatgccagccgtgtgaagcgctaccgcgacgat
gcaccgctgttcagccgcttccagatcgagcaccagatcgagtccgcctactcgcgcact
gtgcagctgccttccggcggcgccatcgtgatcgaccacaccgaagcgctggtgtccatc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagctgctgacgaagtggcacgccagatgcgcctgcgtgacctgggcggtctg
atcgtgatcgacttcatcgacatggaagacgccaagaaccgccgcgaagtggaaaaccgc
ctgcgcgaagccctgcgtcaggaccgtgcccgcgtgcagttcggcaccatcagcaagttc
ggcctgatggaaatgagccgccagcgtctgaagcccgccctgtctgaaggcgcgcacatc
aactgcccacgctgcggtggttccggccacatccgcgacaccgagtcttcggcgctgcag
atcctgcgcatcattcaggaagagtccatgaaggacaacacggccgctgtgcactgccag
gtgcctgtggaagtggcttccttcctgctcaacgaaaagcgtacggaaattgccaagatc
gagctcaagcagcgcgtgtccgtgctcatggtgcccaacaagtcgctggagacgccacac
tacaagctcgagcgcctcaagcacgatgacccacgtctggagaatctggacgcctcgtac
aagctggccgaagaagtggaagatgtgaccaaggtcacacgccgctcgcaggaacccacc
aacaagcagactcctgtgatcaagggcgtgctgcctgatgcacctcccgcacctgaggcg
cgtccccagcctgccgcacgcgcagccaagaatggccgccccgctgcacagcaggcagct
gccgcagcaccacgcaccgaagtgcgcgaacaaggcttcttcgcatggctcaagagcctg
ttcggctttggccccaagcccgcgcccgtagagccagtggctgcccctgtcaagcccgag
ggcacccgcgaagcacgcaatggtgagcgcaatggccgtggcggtcgtaacggccgcaac
ggtgaacgtggcgagcgtggtgaacgcaatggccgcaacgagcgcaatggccgcaacggt
gaacgcaacgagcgcaatgagcgtggcgacaacgagtccagccaccgccgtgaagaccgt
caggatcgccaggaacgcgttgagcgcaatgcagacaatgcacgcccacagcgcgaacca
cgcaaccgtggcgaacgccagccccgcaatctggaagctgcagagcagcgcaaccagcaa
ggtgtgaccggtgctgagcacaacacacctgaagctgctgagcgcccagagcgccagcca
cgccagcgccgtgagcgtcagccacgcaacgtggaagtgcaggcgcaagctgcagccgcg
cagcagctggaagctacggcacaggctgtgcaggaaacggtgaacgaagcccaggcacag
gatgcagcagcacccgcaaccaacggtgaagacgctccacgcaatggccgccgctcgcgc
gaccgctacggccgtgaccgccgcaacaaccgcgagcgccagcccgcagcgcgtgacgag
aatgcagccctagctgcagccgctgaaaacgccgaagtcacacaggctccagacaccagt
gctgaagcagtgactgaagtgaatgagcaaagcgcgccacgccgcagctacttcagccag
gttcagcctgctgtgcaagctgcagagcctgccgctgcagcccagccagcagctgaagcc
gcacctgcagtgccagtggctgaagcagcgaacgctgtggttgagcctgctgcagcccct
gccgtgcaggaagtcgcagcggttgcacccgaagccgtggagcagccccaggccgaagcc
gctgccgagccagtgcaagcagcagcacctgccgaagtgcctgccgcccaacccgtgcgc
accgcagcctacatcctgcccgtgcaggaactgcaagagctggccagcgctgcgggactg
cagtgggtgaactccgatgcggaaaaggtcgctgccgtgcaggctgcgattgctgccgag
cccaagcctgtgcacatcccccgcgagcgtcctcccgtcgtgattctggacgaaggcccg
ctggtgctggtggaaacacgcaaggacttgagcgccatggtgctgccgtttgagcagaca
ccagagcacaacgcttaa
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