Comamonas kerstersii: B5M06_04585
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Entry
B5M06_04585 CDS
T04758
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cke
Comamonas kerstersii
Pathway
cke03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B5M06_04585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cke03400
]
B5M06_04585
Enzymes [BR:
cke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B5M06_04585
DNA repair and recombination proteins [BR:
cke03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B5M06_04585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
Sirohm_synth_C
Motif
Other DBs
NCBI-ProteinID:
AQZ97647
UniProt:
A0A1V0BCJ7
LinkDB
All DBs
Position
complement(980939..984604)
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AA seq
1221 aa
AA seq
DB search
MTQRHVLDARSFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGGEHAFGKPLMPADILV
MTFTRAATRELSDRIRARLVQAAAYFRGQVPEQETPDPFLLDLMAAYPEGPQRERAAWQL
AMAAESMDDAAIFTIDAWCQRMLREHAFDSGNLFDETLESDESQRLVEAAQDYWRQQCYP
LQGQELAMVLQVWKSFADCYEALRSLRPEDMASFVPDGQSLQQLVQQAQAAQQALVQPWK
TIFPRFRDWLLQQVEDAPEHWNSRRFSAKQVQDWVQALGAWVEAPEVMDFWRRKEYATAR
QNLRASEMPACRLKSAPPLEVPPQAHAFEELAEQMAQMPDLRVQMLAHAAAYVHQRMQWL
KQQTRTFGFADMLERLDQALSGENGPALRQRILAQYPVALIDEFQDTSPLQYRLFDQIYR
TADNDPESALLLIGDPKQSIYGFRGADIYSYLRAREATEGRHYVLDVNYRSTEAVVHAVN
RWFAQAEARVGAGAFMFREAQRNPLPFDAVRAKGRAERFQMDGQPVPAMTVVWHEGQGEL
VNTETMLEHMSRACAEQIVRWLNDVRVGFAEDGKPLQRLRPRDIAVLVRTGKQAAAVRRE
LQRRHVASVYLSDQESVFASAEAQDVLVWLRAVAAPRDARAVRAGLATRIMGLSLEQLAW
LAADDEAFDAKSQIVAELHSVWQMQGVLAMLRQTLHRMQLPALWLAETGGERRLTNYLHL
AELLQNASATLEGEQALIRWLAMQIEAPGQGSEEQVVRLESDEDLVKVVTVHKSKGLEYP
VVFLPFAADFREYSDSLVRVPQPDGRRSVDLQPSTEAKQQADKERLREDIRLLYVALTRP
RHAIWVGISALSKHGSKKCVNHKGACGYLLNGGQEASVQGWRDALQALAEGCSDIRVEPL
PAPSAPTLYRSSDVPPPLCVPQTYDAQFDTQWSIASFTRLVRGKSSELPVLPVAAMQPAD
DERALDASAGRKALLPVASSAVWHRFMRGELVGNFIHEQLEWLEGEDFALEADGQGRLSE
QLLRRCERAGRTEQAQDTLQWLRHVVHHPLPPLGCSLAQIRTRLPEMEFWLPIAQLPARE
VDALCRQFILPEMERPMLPDRSLHGMLMGFADLVFVHEGRYWVLDYKTNYLGTDGSAYHA
AALQQAMLQHRYDVQAALYLLALHSLLQSRLGDAYDPAQQLGGALYFFLRGMDGPAQGVH
VVPPMLELLDALQALINEVQA
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcgccacgtattggatgcacgcagctttccgctgcatggcagccgtttgatt
gaagccagtgcgggcacgggcaagacctggacgattgctgcgctctatgtgcgactggtg
ctggggcacgggggtgaacacgcctttggcaagccgctgatgcctgcagacattctggtc
atgactttcacgcgcgcggccacgcgcgagctctcagaccgtatccgcgcacgtctggtg
caggccgccgcgtatttccgtggacaggtgccagagcaggagacgcctgatccgtttttg
ctggacttgatggcggcttaccctgaagggccgcagcgcgagcgagctgcctggcagctg
gccatggcggcggagtccatggacgatgcggccattttcaccattgatgcctggtgccag
cgcatgctgcgcgagcatgcgttcgacagcggcaatctgtttgacgaaacgctggaaagt
gatgaatcccagcgcctggtggaagctgcgcaggactactggcgccagcagtgctatccg
ctgcaggggcaggagctggccatggtgctgcaggtctggaaaagctttgcagattgctat
gaggctttgcgcagccttcgtcccgaagacatggccagttttgtgccagacggacagagc
ctgcaacagctggtccagcaggcacaggcggcgcagcaggcattggtgcagccctggaaa
acgatatttccgcgctttcgcgactggctgctgcaacaggtggaagatgctccggagcac
tggaatagcagacgcttcagcgccaagcaggtgcaggactgggtgcaggcgctgggcgca
tgggtagaggcaccagaagtcatggatttctggcgccgcaaggagtacgccaccgcacgc
cagaatctgcgtgccagtgagatgcccgcctgccgcttgaaaagtgcaccaccgctggag
gtaccgccgcaagcccatgcttttgaggagctggccgagcagatggcgcagatgcccgat
ttgcgggtgcagatgctggcacatgctgcggcctatgtgcaccagcgcatgcagtggctc
aagcagcagacgcgtacctttggctttgcggacatgctggaacgcctggaccaggcactg
tctggcgaaaacggcccagccctgcgccagcgcattctggcgcagtatccggtggcgctg
attgacgagtttcaggacacctcgccgctgcagtaccgcctgtttgaccagatctaccgc
acggcagacaacgaccccgaaagtgcgctgctgctgattggtgatccgaaacagtccatc
tacggctttcgcggcgccgacatctacagctatctgcgcgcacgagaggctacggaaggc
cgccactatgtgctcgatgtgaactaccgctccaccgaagccgtggtgcatgccgtcaac
cgctggttcgcacaggccgaggcccgcgtgggggccggggccttcatgtttcgtgaagcg
cagcgcaacccgctgccgtttgacgctgtgcgtgccaagggccgtgcggagcggtttcag
atggatggtcagcccgttccagccatgactgtggtgtggcatgaggggcagggagagctg
gtcaacacggaaacgatgctggagcatatgtcccgtgcctgtgccgagcagatcgtgcga
tggctcaacgatgtcagggtgggtttcgcagaggatggaaagccgctgcagcgcctgcgt
ccgcgcgatattgctgtgctggtgcgtaccggcaaacaggctgcagccgtacgccgtgaa
ctgcagcgccgccatgtggcgtcggtgtatctgtcagaccaggaatccgtgtttgccagc
gctgaggcacaggacgtgctggtatggctgcgtgctgtggctgcgccgcgcgatgcgcgg
gccgtgcgtgccgggctggcaacgcgcatcatggggctgtcgctggagcagctggcctgg
ctggcggcggatgacgaagcctttgatgccaaaagccagatcgtggctgagctgcacagc
gtctggcagatgcagggcgtgctggccatgttgcgtcagaccttgcaccgcatgcagctg
cctgcgctgtggctggctgaaaccgggggtgaacggcggctgaccaattacctgcatctg
gcggaactgctgcaaaacgcgagtgcgacgctggaaggtgaacaggcactgattcgctgg
ctggccatgcagatcgaagcgccggggcagggcagtgaagaacaggtcgtgcggctggaa
agcgatgaagatctggtcaaggttgtcactgtgcacaaaagcaaggggttggagtatccc
gtggtgtttttgccatttgcggcagatttccgtgagtattccgacagcctggtgcgtgtc
ccccagcctgatggccgccgcagtgtggatctgcagcccagcacggaggccaagcagcag
gcagacaaggagcggctgcgtgaagacattcgtctgctgtatgtggcgctgacgcggcca
cgccatgcgatctgggtgggcatcagtgcgctgagcaagcacggctcaaaaaaatgtgtg
aaccacaagggtgcttgtggttatctgctcaatggcgggcaggaagcctctgtgcagggt
tggcgtgatgcactgcaggcactggctgaaggctgcagcgacatacgggtagagcctttg
ccagcgccttctgcacccacgctgtaccgtagcagcgatgtaccgccgccactgtgcgtt
ccgcagacctatgatgcccagtttgacacgcagtggagcattgccagctttacccgcctg
gtgcgtggcaaaagcagtgagctgccggtgctgcctgtggcggccatgcagcccgccgat
gacgagcgtgcgctggatgcgagcgcagggcgcaaggcgctgctgcccgtggccagcagc
gccgtgtggcaccgctttatgcggggtgagttggtgggcaactttatccacgagcagctg
gagtggctggagggtgaagactttgcgctggaagccgatgggcaaggccgcctgagcgag
cagctgctgcgccgctgcgaacgcgcgggccgcacggagcaggcgcaggacacgctgcag
tggctgcgccatgtggtgcaccatccgctgccgccactgggctgcagcctggcgcagatc
cgcacgcggctgccggaaatggaattctggctgccgattgcgcagctgcccgcgcgtgaa
gtcgatgcgctgtgccgccagttcatcttgccggagatggagcgtcccatgctgccagac
cgcagcctgcacggcatgctgatgggctttgcagacctggtttttgtgcatgaaggccgc
tactgggtgctggactacaagaccaactatctgggcacagatggcagcgcctaccatgcc
gctgcgctgcagcaggccatgctgcagcaccgctatgacgtacaggctgcgctgtatctg
ctggcgctgcatagcctgctgcaaagccgtctgggcgatgcctatgacccagcgcagcag
ttgggcggcgcgctgtatttctttttgcgcggcatggatgggccggcacagggtgtgcat
gtggtgccccccatgctggagctgctggacgccctgcaggcattgatcaacgaggtgcag
gcatga
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