Comamonas kerstersii: B5M06_10385
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Entry
B5M06_10385 CDS
T04758
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cke
Comamonas kerstersii
Pathway
cke02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cke00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B5M06_10385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cke03021
]
B5M06_10385
Transcription machinery [BR:
cke03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B5M06_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
DUF6522
DUF4240
Motif
Other DBs
NCBI-ProteinID:
AQZ98595
UniProt:
A0A0W7Z1L6
LinkDB
All DBs
Position
complement(2226370..2228850)
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AA seq
826 aa
AA seq
DB search
MPVAKSKQAPDATAKPKTSKSTAASAKPATKAAAPAAVKKPAATKAQAAASKKDSDMATL
SQAELKAMADALLAEATPKRGKKKADADGATPAKKPAAKKAAAPKKEAVVAEEVVEEKKP
AAKKAASKTAAAKTAATKTPAKRGRKPKAKEPSDLDEDLGDFDADLELEAEAEPEAEVAE
ASPTEKAKPLRMKISKAKERALMKEFGLDETVLTEEEMNTRRQRLKMLIKLGKTRGYLTH
AEINDHLPDKLVDAETLEVVISMLNDMGVAVYEQTPDAETLLLNNTGQSATSEEEAEEEA
EAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPAT
IAEVLGMAAEIREGKVVISTIVDGFVNADENDDYVAEEDFDEYDEEDDDDGKGGSKALTK
KLEELKNEALSRFDKIADLFEKLRKAYDKEGWGSANYIKVQKAITEELMTIRFTAKTIEK
LCDLVRNQVDDVRKKERELRKIIVDKCGMPQEKFIASFPPNLLNLKWVEEQAAGGHPWSN
VLSRNIPAVQELQQSLIDLQARVVVPLDELKSINKRMNDGERASRFAKKEMIEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMDIPEDKIRKIMKIAKEPISME
TPIGDDDDSHLGDFIEDTNNTAPVDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMS
TDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttgcaaagtccaagcaggcgccagacgctacagccaagcccaaaacttccaaa
tccacggcagccagtgccaagccagccaccaaggctgcagcaccagccgctgtgaagaag
cccgcagccaccaaggctcaagcggctgcttccaagaaagattccgatatggcgaccctg
tcccaagcagaactcaaagcaatggccgatgccctgttggcagaagctactcccaagcgc
ggcaagaaaaaagccgacgctgatggcgctactcccgctaaaaagcctgcagccaagaag
gccgctgctcccaagaaggaagctgtcgtagccgaagaggttgtggaagaaaagaagcct
gcagccaagaaggctgcaagcaagactgctgctgccaagacagcagccaccaagacacct
gccaagcgcggccgcaagcccaaggccaaggaacccagcgatctggacgaagacctgggc
gactttgatgccgatctggagctggaagctgaagcagaacccgaagccgaggtcgcagaa
gccagccccaccgaaaaggccaagccgctgcgcatgaagatcagcaaggccaaggaacgc
gccttgatgaaggaattcggtctggacgaaaccgttctgactgaagaagaaatgaacacc
cgccgtcagcgtctgaagatgctgatcaagctgggtaagacccgcggctacctgacccac
gctgaaatcaacgaccacctgcccgacaagctggtcgatgctgaaacgctggaagtcgtg
atctccatgttgaacgacatgggcgtggctgtgtacgagcagactcccgatgcggaaacc
ctgctgctgaacaacaccggccagtcggccacctccgaagaagaagcggaagaagaagcc
gaagctgcgctgtcgaccgtggactccgaattcggccgcaccaccgaccccgtgcgcatg
tacatgcgtgaaatgggcaccgtggagctgctgacccgcgaaggcgaaattgaaatcgcc
aagcgcatcgaaggcggcctgatggacatgatggaagccatctcggcttcccctgccacc
attgccgaagtgctgggcatggccgcggaaatccgcgaaggcaaggtcgtcatctccacc
atcgtggacggctttgtgaacgccgacgaaaacgatgactacgtggccgaagaagacttc
gacgaatacgacgaagaagacgatgacgacggcaagggcggctccaaggcgctgaccaag
aagctggaagaactcaagaacgaagccctgtcgcgctttgacaagattgctgacctgttc
gagaagctgcgcaaggcctacgacaaggaaggctggggttctgccaactacatcaaggtg
cagaaggccatcactgaagagctgatgaccatccgcttcaccgccaagaccatcgagaag
ctgtgcgacctggtgcgtaaccaggtggatgacgtgcgcaagaaggaacgcgagctgcgc
aagatcatcgtggacaagtgcggcatgcctcaggagaagttcattgcgagcttccccccc
aacctgctgaacctcaagtgggtcgaagagcaggcagctggcggccacccctggagcaat
gtgctgtcgcgcaacattcctgccgtgcaggaactgcagcagtcgctgatcgacctgcag
gcgcgcgtggttgtgcctctggatgagctcaagagcatcaacaagcgcatgaacgatggc
gaacgcgccagccgttttgcgaagaaggagatgatcgaggccaacctgcgtctggtgatc
tcgattgccaagaagtacaccaaccgtggtctgcagttcctggatctgattcaggaaggc
aacatcggcctgatgaaggccgtggacaagttcgaataccgccgcggctacaagttctcg
acctacgccacatggtggatccgccaggccattacccgctccatcgcggaccaggcccgc
acgatccgtatccctgtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgc
cagcacctgcaggagttcggctttgagcctgacgcctccatcctggccgagaagatggac
atccccgaggacaagatccgcaagatcatgaagatcgccaaggagcctatctccatggag
acgcccatcggtgatgatgacgacagccacctgggcgacttcatcgaggacaccaacaac
accgcacccgtggacgctgccatgcaggccggcctgcgcgatgtggtcaaggacatcctc
gacggcctcaccccccgcgaagccaaggtgctgcgcatgcgcttcggtatcgaaatgtct
accgaccacacactggaagaagtgggcaagcagtttgacgtgacacgtgagcgtatccgt
cagatcgaagccaaggccctgcgcaagctcaagcaccccagccgttcggacaagctgcgc
agctttattgactcgctgtaa
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integrated database retrieval system
