Corynebacterium kefirresidentii: I6I12_00620
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Entry
I6I12_00620 CDS
T07267
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ckf
Corynebacterium kefirresidentii
Brite
KEGG Orthology (KO) [BR:
ckf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckf03019
]
I6I12_00620
Enzymes [BR:
ckf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6I12_00620
Messenger RNA biogenesis [BR:
ckf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6I12_00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_30
AAA_11
AAA_19
Flavi_DEAD
Helicase_RecD
ResIII
ParA
AAA_16
nSTAND3
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQN47856
LinkDB
All DBs
Position
69354..71621
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AA seq
755 aa
AA seq
DB search
MFDLARIGAGLPVAETIDSLPSTGNVVIQAPPGTGKTTLVPPALANHAAGRGKVIVTAPR
RVAVRAAAQRLSTLNGTPDKVGFAIRGESSKGSEVEFVTPGVLLRRLLKDPELEGVAAVA
IDEVHERQLDTDLVLGMCLELAELREDFRVIAMSATVDAQRFSQLMDAPVHVTEAVTHPL
DIQYAPMPGRAAGTREFYGDVAKQAARQQESTLVFVPGVREVNLVCDALAGHNVFPLHGK
QTTAEQDAALYTEEQRIVVATSIAESSLTVPGVRVVVDAGLSRVPRRDAQRGMSGLVTVS
TSKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHTTPEILSADLTQAALFLDCWGAGP
DFPLLDPPPAQALASAQATLKRIGATQELALLPTDPRLGASLLRHGSQAAPIIASLADAP
LTPDLTRHRPPQREVKRLARLVDDLGPADPGKVVATAFPEQVAKRMGEDYLLASGTRARL
LDNSGLAGAPWLAIAEVSLSNAGNAIIRSAARIEESAALAAIGVTEETRAFLRDGRVRGV
KVRAAGAITLSETPVKVTGPAAEEALAAGIREEGLGLFTFSEKAQRLKDRLHHLHSHFGD
PWPDVDSADPAEWLGPELHRIAEGTPAAKLDMYPALQRLLPWPEATHLDELAPERLPVPS
GRDAIIDWSGDRPVVHIKLQECFGLAESPEYCGHRVQFHLLSPAGRPLAVTDDLASFWSG
PYAGVRADMRGRYPKHPWPEDPWNAIATARTKNRM
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatctcgctcgcatcggcgcgggacttcccgtagccgagaccatcgattcgcta
cctagcaccggaaacgtcgtcatccaggccccgcccggcacgggtaagaccacactcgtg
cctccggcgctggccaatcatgcggcaggacgtggcaaggtcatcgtcaccgccccgcga
cgtgtggccgtgcgcgcggccgcgcagcgcttgagcacacttaacggcacgccggacaag
gtcggcttcgccatccggggcgagtccagcaagggcagcgaggtcgagttcgtcacgccg
ggcgtgctgctgcgccgcctgctgaaggatccggaactcgagggcgtggccgccgttgcc
atcgatgaggtccacgagcgtcagctcgatacggatttggtgctaggcatgtgcctggag
ctagccgaattgcgtgaggattttcgcgtcatcgccatgtctgcaaccgtggatgcgcag
cgtttttcccagcttatggatgcgcccgtccacgtgaccgaggcagtcacccatccgctc
gacatccagtacgcccccatgccgggcagggcggcgggaacgagggagttttacggggac
gtcgccaagcaggcagctcgccagcaggaatcaacgctggtctttgtgcccggtgtgcgc
gaggtcaacctcgtgtgcgatgccttagcaggccataatgtcttccccctgcatggcaag
caaaccaccgcggagcaagacgccgcgctatataccgaggaacagcgcatcgtcgtggct
acctctatcgcggagtcctcgctgaccgtgccgggtgtgcgcgtagtggtagatgccggg
ctttcccgcgttccccgacgcgatgcccaacgcggcatgtccgggttggtgacggtttct
acctcaaagtcgagtgccgatcagcgcgctggtcgtgccggccgtgaggcaccaggcacc
gtgattcgctgctattcgcaggacgattaccagcacttttccccacacaccaccccggag
atcctctccgcggacctcacccaggccgcgctgtttctggactgctggggcgcgggcccg
gatttcccgctgctcgatccgccgccggcccaggccctcgcctccgcgcaggcaacgctc
aagcgcattggcgcgacgcaggaactcgccctcctgcccaccgatccgcgcctcggcgcc
tccttgctccgccacggcagccaggccgcgcccattatcgcctcgcttgccgacgccccc
ttaacccccgatctcacccgtcaccgcccacctcaaagagaggtcaagcggcttgcacgt
ctcgtagacgatctcggccccgccgatcccgggaaggtcgtagccaccgcctttcccgag
caggtggccaagcgcatgggcgaagattacctgctggccagcggcacccgcgcgcgcctg
ctcgataactcaggtttggccggagcgccgtggcttgccatcgcggaggtgtccttgtcc
aatgcgggcaatgccatcattcgctcggccgcccgcatcgaggaatcggctgccctggcg
gccatcggcgtcaccgaggaaacccgcgccttcctgcgcgatggccgcgtgcgcggcgtc
aaggtcagggccgcgggcgccatcaccctttctgagaccccggttaaagtcacgggcccc
gcagccgaggaggcgcttgccgccggcatccgtgaagaaggcctaggactctttaccttc
agcgagaaggcccaaagattaaaagaccgcctgcaccacctgcactcccactttggcgat
ccgtggcccgatgtcgactccgcggatcccgccgaatggctcgggcccgaattacatcgc
atcgccgagggcactcccgccgccaagctagacatgtaccccgcgctgcaacgcctcctt
ccctggccggaagccacccacctggacgagctcgcccctgagcgccttccggtgccctcc
ggccgcgatgccataatcgactggtccggcgatcgccccgtggttcatatcaagttgcaa
gaatgcttcggcctagccgaatcccccgaatactgcggccaccgcgtgcaattccacctg
ctctcccccgccggccggccgctcgcggtgaccgatgatctcgccagcttctggtccgga
ccttatgccggcgtgcgcgccgatatgcgcggccgctaccccaagcacccctggccggag
gacccgtggaatgcgattgctaccgcgcgcaccaagaatcggatgtaa
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