Corynebacterium kefirresidentii: I6I12_05480
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Entry
I6I12_05480 CDS
T07267
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ckf
Corynebacterium kefirresidentii
Pathway
ckf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ckf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6I12_05480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ckf03019
]
I6I12_05480
Messenger RNA biogenesis [BR:
ckf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6I12_05480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QQN48738
LinkDB
All DBs
Position
1126593..1128722
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AA seq
709 aa
AA seq
DB search
MNEPRNRSRKVTRKAGPPAENETASNEAASPVFQAPATDAGNSAQDKPAKGDKDNSGKKN
SSDNHHDGGGNNRRSRSRGSRGRGRGGNGNGNNHGGNNNHGGNNKNGNGKGRGRNNRGRR
NVPKSMQGADLTKRLPEPPKQPKDALRIYALGGISEIGRNMTVFEYGDDLLIIDCGVLFP
SSGEPGVDLILPDFGPIEKKIHKVKALVVTHAHEDHIGAIPWLLKLRPDIPIVASRFTIA
LIAAKCKEHRQKPKFVEVNEKSDVTYGPFRVRFWAVNHSVPDALGIMLGTPAGNIIHTGD
IKLDQTPLDNRPTDLPALSRYGDEGVDLMLCDSTNATVPGVSASEGDIPANFKRLVAGAK
QRVILASFASNVYRVQAAIDAAVANGRKVAFNGRSMMRNMEIAEKMGFLKVPRGTIIPID
EAAKMAPHKTMLITTGTQGEPMAALSRMARREHRQITVRDGDTIIFSSSLIPGNEEAVYG
VINMLSQIGANVITNQDVKVHASGHGYAGELLFLYNAARPRNAMPVHGEWRHLRANKELA
ISTGVDRDRTVLAQNGVVVDLRKGRAEVVGQMQVGNLYVDGVSMGDVDADTLADRTNLGT
GGVVSITCVIDNRTSRLLEHPTVSTTGFSDDDRGIVPEVAEMVENTMNDLAAEGENDTYR
MVQKLRRKVSKLMDSKYKREPVILPTIVPTNSGPLVTDDEDVDASRESL
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaccccgtaaccgttcccgcaaggtgacccgcaaggcgggcccaccggcggaa
aacgaaaccgcctccaacgaggcggcttcgccagttttccaagccccagctactgatgct
ggcaattccgcacaggataagccggctaagggcgataaggacaactctggcaaaaagaat
tcttccgataaccaccatgatggcggcggtaacaaccgccgctcccgttcccgtggtagc
cgcggccgtggccgtggtggtaacggcaacggcaataaccatggtggaaataataaccat
ggcggcaacaacaaaaatggcaacggtaagggccgcggccgcaataaccgtggtcgccgc
aacgtgcccaagtcgatgcagggtgcggatctaaccaagcgtttgccagagccaccaaag
cagccgaaggatgcactccgcatttatgctttgggcggaatctcggagatcggtcgcaat
atgaccgtcttcgagtacggtgatgacctcctcatcattgactgcggtgtgctcttcccg
tcttccggtgagccgggcgtggatcttatcctgcctgactttggccccatcgagaagaag
atccacaaggtcaaggccctcgtcgttactcacgcgcacgaggatcacatcggagctatt
ccgtggctgctgaagctgcgcccagatatccctattgttgcttcccgctttaccatcgcg
ctcattgccgcgaagtgtaaggaacatcgtcagaagccgaagttcgtcgaggttaatgaa
aaatccgacgtgacttatggaccattccgggttcgcttctgggcagttaaccactccgta
ccggacgccttgggcatcatgttgggaaccccagcgggcaatatcatccataccggtgat
atcaagctggatcagaccccactggataatcgtccaaccgatctgccagccctgtctcgt
tacggtgatgagggcgtcgacctcatgctgtgtgattccaccaatgccaccgtgcctggt
gtatctgcatctgagggagatatccccgccaactttaagcgtctcgttgccggcgcgaag
cagcgcgttatcttggcttcctttgcatccaacgtctaccgcgtgcaggctgccatcgac
gctgccgtggcaaatggccgcaaggtggctttcaacggccgttcgatgatgcgcaacatg
gaaatcgcggaaaagatgggctttttgaaggtccctcgcggcaccattatccccattgat
gaggctgccaagatggctccgcacaagaccatgctcattaccaccggtacgcagggtgag
ccaatggccgctctatcgcgcatggctcgtcgcgagcaccgccaaattaccgtacgtgat
ggcgataccatcatcttctcctcctcgcttatcccgggcaatgaggaagcggtctacggc
gtgattaatatgctgtctcagattggcgccaacgtcattactaaccaagacgtcaaggtg
cacgcctcgggccacggttatgccggtgagctgctattcctgtacaacgcagcgcgcccg
cgcaacgctatgccggtgcacggcgagtggcgccaccttcgtgccaataaggagctggcc
atttccaccggtgtggaccgcgatcgtacggtgctggcacaaaacggcgtcgtcgtggat
ttgcgcaagggccgcgccgaggtcgtaggccagatgcaggtgggcaacctctacgtcgat
ggtgtgtccatgggcgatgtggatgccgataccttggccgaccgcaccaacctgggaact
ggtggcgtggtatctatcacgtgcgtgattgataaccgcacctcgcgcctattggagcac
ccaacggtatctaccacaggcttttccgatgatgaccgcggcatcgtgccggaggtcgca
gaaatggtagaaaacaccatgaatgatctcgccgccgagggcgagaacgatacctaccgc
atggtgcagaaactgcgccgcaaggtatctaaacttatggattcgaagtacaagcgcgag
ccggtcattctgccgaccatcgtgccgaccaactccggcccattggttaccgatgatgaa
gacgtagatgcttctcgtgagtccctgtaa
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