Conchiformibius kuhniae: LVJ77_00310
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Entry
LVJ77_00310 CDS
T08263
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ckh
Conchiformibius kuhniae
Pathway
ckh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ckh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LVJ77_00310 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ckh03021
]
LVJ77_00310 (rpoD)
Transcription machinery [BR:
ckh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LVJ77_00310 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
Peptidase_C57
Motif
Other DBs
NCBI-ProteinID:
UOP04863
UniProt:
A0A8T9MYD0
LinkDB
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Position
complement(617907..619865)
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AA seq
652 aa
AA seq
DB search
MSQHAYHNDNEEQNTDDNRPLTPEEQRERLRRLIIFGKERGYITYAEINDALPDDMSDAE
QIDNIVNMIQGLGIQVTEEAPDAETLLMSDNSAAITDEDAVAEAEAALSQADSEFGRTTD
PVRMYMREMGQVDLLTREDEIIIAKKIENALKNMIQAISACPGSVGEILALIDKIKKNEI
RVDEVVEAIIDPNEVLLNELGLGHLENAPTPAANNNDTNTEEDGDADEDGDDDDGDVNGG
METNVEELKAQVLEHFKHIQKSYDKMLAALAKYDSKHSKYLEHRSAIAAKLLEVRFATRQ
IESLSENLRGKVERIRKLEREIRDICLERVQMEREYFLQSFLPNATNLNWLAEEIAKERV
WSGALERFQHAILEKQTEMAQLEQNACISIAELKEISKNMVLSEKETAAAKQEMIQANLR
LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD
QARTIRIPVHMIETINKMNRISRQYLQENGEEPDSAKLAELMEMPEDKIRKIMKIAKEPI
SMETPIGDDDDSHLGDFIEDINNVAPADAAMYSSLREVTKDVLESLTPREAKVLRMRFGI
DMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLDSEDAK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacatgcctaccacaacgacaacgaagaacaaaacaccgatgacaaccgtccg
ctcacgcccgaagagcagcgcgagcgtttgcgccgcctgattatcttcggcaaggagcgc
ggctacatcacctacgccgaaatcaacgacgcgctgccggacgacatgtccgatgccgaa
caaatcgacaacatcgtcaatatgattcaaggcttgggcattcaggttaccgaagaagca
cccgatgccgaaaccctgctgatgagcgacaacagcgccgccatcaccgatgaagacgca
gtggcggaagccgaagccgcgctttcgcaagccgattccgaattcgggcgcaccaccgac
cccgtacgcatgtacatgcgcgaaatggggcaagtggatttgctcacccgcgaagacgaa
atcatcattgccaaaaaaattgaaaacgccctgaaaaacatgattcaggcgatttccgcc
tgtccgggctcggtgggcgaaattttggcactgattgacaaaatcaagaaaaacgaaatc
cgcgtggacgaagtggtggaagccatcatcgacccgaacgaagttttgctcaacgagttg
ggcttggggcatttggaaaacgcccccacccccgccgccaacaacaatgataccaacacc
gaagaagacggcgatgccgatgaagacggcgacgacgacgacggcgatgtcaacggcggc
atggaaaccaatgtggaagaactcaaagcacaggtactggagcatttcaaacacatccaa
aaaagctacgacaaaatgctggcagcactggcaaaatacgacagcaaacacagcaaatat
ctggagcaccgcagcgcgattgccgccaaactgctggaagtgcgctttgccacccgccaa
attgaaagcctgagcgaaaacctgcgcggcaaagtggagcgcatccgcaaactggagcgc
gaaatccgcgacatctgcttggagcgcgtgcaaatggagcgcgaatatttcctgcaaagc
ttcctgcccaacgccaccaacctgaattggctggcagaagaaatcgccaaagaacgggtg
tggagcggcgcattggagcgtttccagcacgccattttggaaaagcaaacggaaatggcg
caattggaacaaaatgcctgcatttccattgccgagctgaaagaaatcagcaaaaatatg
gtgttgagcgaaaaagaaaccgccgccgccaagcaggagatgattcaggcaaatttgcgt
ttggtgatttccattgccaaaaaatacaccaatcgcggtttgcagtttcttgatttgatt
caggaaggcaatatcgggctgatgaaggcggtggacaaattcgaataccggcgcggttac
aaattttccacttacgccacatggtggattcgccaagccatcacccgctccatcgccgac
caagcacgcacgattcgcattcccgtgcatatgattgaaaccattaataaaatgaaccgc
atctcacgccaatacctgcaggaaaacggcgaagaacccgattcggcgaagctggcggag
ctgatggaaatgccggaagacaaaatccgcaaaatcatgaaaatcgccaaagagccgatt
tcgatggaaacccccatcggcgatgacgatgattcgcatctgggtgatttcattgaagac
atcaataatgtcgctcctgccgatgcggcgatgtattccagtttgcgcgaggtaaccaaa
gacgtgttggaaagcctgaccccgcgcgaggcgaaggtgttgagaatgcgtttcggcatt
gatatgaacaccgaccacacgctggaagaagtgggcaagcagtttgacgttacccgcgag
cgtatccgccaaatcgaggcgaaagccttgcgcaaactgcgccaccccacccgcagcgac
cgtttgaagagctttttggacagcgaagacgcgaagtaa
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